graph 1.22.5
Robert Gentleman
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/graph | | Last Changed Rev: 41979 / Revision: 42512 | | Last Changed Date: 2009-09-27 05:28:20 -0700 (Sun, 27 Sep 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/graph.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.22.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'src' contains:
BioC_graph.dll
These are unlikely file names for src files.
* checking whether package 'graph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
inEdges,character-graphNEL: no visible binding for global variable
'from'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
E:/biocbld/bbs-2.4-bioc/meat/graph.Rcheck/00check.log
for details
* Installing *source* package 'graph' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c graph.c -o graph.o
gcc -shared -s -o graph.dll tmp.def graph.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
mv graph.dll BioC_graph.dll
... done
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'graph'
Formats: text html latex example chm
DFS text html latex example chm
IMCA text html latex example chm
MAPKsig text html latex example chm
acc-methods text html latex example chm
addEdge text html latex example chm
addNode text html latex example chm
adj-methods text html latex example chm
apoptosisGraph text html latex example chm
attrData-class text html latex example chm
attrDataItem-methods text html latex chm
attrDefaults-methods text html latex chm
aveNumEdges text html latex example chm
biocRepos text html latex example chm
boundary text html latex example chm
buildRepDepGraph text html latex example chm
calcProb text html latex example chm
calcSumProb text html latex example chm
clearNode text html latex example chm
clusterGraph-class text html latex example chm
clusteringCoefficient-methods text html latex example chm
combineNodes text html latex example chm
distGraph-class text html latex example chm
duplicatedEdges text html latex example chm
edgeData-methods text html latex chm
edgeDataDefaults-methods text html latex chm
edgeMatrix text html latex example chm
edgeWeights text html latex example chm
fromGXL-methods text html latex example chm
graph-class text html latex example chm
graph2SparseM text html latex example chm
graphAM-class text html latex example chm
graphExamples text html latex example chm
graphNEL-class text html latex example chm
Note: ignoring empty \keyword entries in file 'graphRendering.Rd'
Note: removing empty section \details in file 'graphRendering.Rd'
Note: removing empty section \examples in file 'graphRendering.Rd'
Note: removing empty section \seealso in file 'graphRendering.Rd'
Note: ignoring empty \keyword entries in file 'graphRendering.Rd'
Note: removing empty section \details in file 'graphRendering.Rd'
Note: removing empty section \examples in file 'graphRendering.Rd'
Note: removing empty section \seealso in file 'graphRendering.Rd'
graphRendering text html latex chm
inEdges text html latex example chm
internal text html latex chm
isAdjacent-methods text html latex chm
isDirected-methods text html latex chm
Note: ignoring empty \keyword entries in file 'leaves.Rd'
Note: ignoring empty \keyword entries in file 'leaves.Rd'
leaves text html latex example chm
listEdges text html latex example chm
matrix2Graph text html latex example chm
mostEdges text html latex example chm
multigraph text html latex chm
nodeData-methods text html latex chm
nodeDataDefaults-methods text html latex chm
numNoEdges text html latex example chm
pancrCaIni text html latex example chm
randomEGraph text html latex example chm
randomGraph text html latex example chm
randomNodeGraph text html latex example chm
removeEdge text html latex example chm
removeNode text html latex example chm
renderInfo-class text html latex example chm
reverseEdgeDirections text html latex example chm
settings text html latex chm
simpleEdge-class text html latex example chm
standardLabeling text html latex example chm
subGraph text html latex example chm
toDotR-methods text html latex example chm
ugraph text html latex example chm
validGraph text html latex example chm
write.tlp text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\GRAPH~1.RCH\00_PKG~1\graph\chm\graph.chm
Compile time: 0 minutes, 1 second
63 Topics
485 Local links
5 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\GRAPH~1.RCH\00_PKG~1\graph\chm\graph.chm, 97,150 bytes
Compression decreased file by 188,152 bytes.
** building package indices ...
** MD5 sums
* DONE (graph)