limma 2.18.3
Gordon Smyth
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/limma | | Last Changed Rev: 41423 / Revision: 42512 | | Last Changed Date: 2009-08-31 01:36:40 -0700 (Mon, 31 Aug 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | [ OK ] | WARNINGS | OK |
* checking for file 'limma/DESCRIPTION' ... OK
* preparing 'limma':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package ‘limma’ ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c normexp.c -o normexp.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o limma.so normexp.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c normexp.c -o normexp.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o limma.so normexp.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c normexp.c -o normexp.o
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o limma.so normexp.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c normexp.c -o normexp.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o limma.so normexp.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'limma'
Formats: text html latex example
01Introduction text html latex
02classes text html latex
03reading text html latex
04Background text html latex
05Normalization text html latex
06linearmodels text html latex
07SingleChannel text html latex
08Tests text html latex
09Diagnostics text html latex
10Other text html latex
EList text html latex
LargeDataObject text html latex example
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alias2Symbol text html latex example
anova-method text html latex
arrayWeights text html latex example
arrayWeightsQuick text html latex example
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cbind text html latex example
changelog text html latex
channel2M text html latex example
classifytests text html latex example
contrasts.fit text html latex example
controlStatus text html latex example
convest text html latex example
decideTests text html latex
dim text html latex example
dimnames text html latex
dupcor text html latex example
ebayes text html latex example
exprsMA text html latex
fitfdist text html latex
fitted.MArrayLM text html latex
geneSetTest text html latex example
getEAWP text html latex
getSpacing text html latex example
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intraspotCorrelation text html latex example
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isnumeric text html latex example
kooperberg text html latex example
limmaUsersGuide text html latex example
lm.series text html latex
lmFit text html latex example
lmscFit text html latex example
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ma3x3 text html latex example
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mdplot text html latex
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modelMatrix text html latex example
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normexpfit text html latex example
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readSpotTypes text html latex
readTargets text html latex
readgal text html latex example
removeBatchEffect text html latex
removeext text html latex example
residuals.MArrayLM text html latex
rglist text html latex
roast text html latex example
romer text html latex example
selectmodel text html latex example
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trimWhiteSpace text html latex example
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venn text html latex example
volcanoplot text html latex example
weightedmedian text html latex example
writefit text html latex
zscore text html latex example
** building package indices ...
* DONE (limma)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'limma_2.18.3.tar.gz'