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Package 172/319HostnameOS / ArchBUILDCHECKBUILD BIN
maanova 1.14.0
Keith Sheppard
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/maanova
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: maanova
Version: 1.14.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes maanova_1.14.0.tar.gz
StartedAt: 2009-10-20 17:31:24 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:32:34 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 70.3 seconds
RetCode: 0
Status: OK
CheckDir: maanova.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/maanova.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maanova/DESCRIPTION' ... OK
* this is package 'maanova' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maanova' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

maanova.Rcheck/00install.out:

* Installing *source* package 'maanova' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c makeratio.c -o makeratio.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c masvd.c -o masvd.o
masvd.c:114:2: warning: "/*" within comment
masvd.c:154:1: warning: "/*" within comment
masvd.c:161:5: warning: "/*" within comment
masvd.c:165:2: warning: "/*" within comment
masvd.c:189:2: warning: "/*" within comment
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c shift.c -o shift.o
shift.c: In function 'shift':
shift.c:27: warning: unused variable 'k'
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c util.c -o util.o
gcc -shared -s -o maanova.dll tmp.def makeratio.o masvd.o shift.o util.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lRlapack -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'maanova'
     Formats: text html latex example chm 
  PairContrast                      text    html    latex   example chm
  Rmaanova.version                  text    html    latex   example chm
  abf1                              text    html    latex   example chm
  adjPval                           text    html    latex   example chm
  arrayview                         text    html    latex   example chm
  consensus                         text    html    latex   example chm
  dyeswapfilter                     text    html    latex   example chm
  fill.missing                      text    html    latex   example chm
  fitmaanova                        text    html    latex   example chm
  fom                               text    html    latex   example chm
  geneprofile                       text    html    latex   example chm
  gridcheck                         text    html    latex   example chm
  kidney                            text    html    latex   example chm
  maanova-internal                  text    html    latex   example chm
  macluster                         text    html    latex   example chm
  matest                            text    html    latex   example chm
  read.madata                       text    html    latex   example chm
  resiplot                          text    html    latex   example chm
  riplot                            text    html    latex   example chm
  subset.madata                     text    html    latex   example chm
  summarytable                      text    html    latex   example chm
  transform.madata                  text    html    latex   example chm
  varplot                           text    html    latex   example chm
  volcano                           text    html    latex   example chm
  write.madata                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\MAANOV~1.RCH\00_PKG~1\maanova\chm\maanova.chm


Compile time: 0 minutes, 0 seconds
26	Topics
77	Local links
1	Internet link
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\MAANOV~1.RCH\00_PKG~1\maanova\chm\maanova.chm, 68,502 bytes
Compression decreased file by 50,055 bytes.
** building package indices ...
** MD5 sums
* DONE (maanova)