Package: microRNA

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes microRNA_1.2.0.tar.gz

StartedAt: 2009-10-20 18:14:11 -0700 (Tue, 20 Oct 2009)

EndedAt: 2009-10-20 18:16:34 -0700 (Tue, 20 Oct 2009)

EllapsedTime: 143.2 seconds

RetCode: 0

Status: OK

CheckDir: microRNA.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/microRNA.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'microRNA/DESCRIPTION' ... OK
* this is package 'microRNA' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'microRNA' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

* Installing *source* package ‘microRNA’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:base :

	 cbind,
	 duplicated,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rank,
	 rbind,
	 rep.int,
	 sapply,
	 sort,
	 table,
	 unique 

** help
*** installing help indices
 >>> Building/Updating help pages for package 'microRNA'
     Formats: text html latex example 
  RNA2DNA                           text    html    latex   example
Note: ignoring empty \keyword entries in file 'get_selfhyb_subseq.Rd'
  get_selfhyb_subseq                text    html    latex   example
  hsSeqs                            text    html    latex   example
  hsTargets                         text    html    latex   example
  matchSeeds                        text    html    latex   example
  mmSeqs                            text    html    latex   example
  mmTargets                         text    html    latex   example
  s3utr                             text    html    latex   example
  seedRegions                       text    html    latex   example
** building package indices ...
* DONE (microRNA)