nem 2.8.0
Christian Bender
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/nem | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/nem.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'nem/DESCRIPTION' ... OK
* this is package 'nem' version '2.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'nem' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package ‘nem’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: class
Loading required package: grid
Warning in fun(...) :
Rgraphviz built with Graphviz version 2.22.2.
Found installed Graphviz version 2.24.0. This _may_ cause problems.
Attaching package: 'RBGL'
The following object(s) are masked from package:e1071 :
extractPath
** help
*** installing help indices
>>> Building/Updating help pages for package 'nem'
Formats: text html latex example
Note: removing empty section \seealso in file 'BFSlevel.Rd'
BFSlevel text html latex example
BoutrosRNAi2002 text html latex example
SCCgraph text html latex example
SahinRNAi2008 text html latex example
closest.transitive.greedy text html latex
enumerate.models text html latex example
generateNetwork text html latex example
getDensityMatrix text html latex
infer.edge.type text html latex example
Note: removing empty section \details in file 'internal.Rd'
internal text html latex
Note: removing empty section \note in file 'local.model.prior.Rd'
Note: removing empty section \references in file 'local.model.prior.Rd'
local.model.prior text html latex example
nem text html latex example
nem.bootstrap text html latex example
nem.calcSignificance text html latex example
nem.consensus text html latex example
nem.cont.preprocess text html latex example
nem.discretize text html latex example
nem.jackknife text html latex example
nemModelSelection text html latex example
network.AIC text html latex example
plot.nem text html latex
plotEffects text html latex example
prune.graph text html latex example
selectEGenes text html latex example
set.default.parameters text html latex example
sim.intervention text html latex example
Note: removing empty section \seealso in file 'subsets.Rd'
subsets text html latex example
transitive.closure text html latex example
transitive.projections text html latex
transitive.reduction text html latex example
** building package indices ...
* DONE (nem)