oneChannelGUI 1.10.11
Raffaele A Calogero
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/oneChannelGUI | | Last Changed Rev: 42379 / Revision: 42512 | | Last Changed Date: 2009-10-14 01:12:40 -0700 (Wed, 14 Oct 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/oneChannelGUI.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'oneChannelGUI/DESCRIPTION' ... OK
* this is package 'oneChannelGUI' version '1.10.11'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'oneChannelGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.aptDir: no visible binding for global variable '.affylmGUIglobals'
.consistentFilter: no visible binding for global variable
'.affylmGUIglobals'
.consistentFilter: no visible binding for global variable
'affylmGUIenvironment'
.consistentFilter : onOK: no visible binding for global variable
'affylmGUIenvironment'
.consistentFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
.downloadLibs: no visible binding for global variable
'.affylmGUIglobals'
.downloadLibs: no visible binding for global variable
'affylmGUIenvironment'
.exonTopTable: no visible binding for global variable
'affylmGUIenvironment'
.GetContrasts: no visible binding for global variable
'affylmGUIenvironment'
.GetContrasts: no visible global function definition for 'limmaExon'
.gettingEG: no visible binding for global variable
'affylmGUIenvironment'
.pamr.confusion.mod: no visible binding for global variable
'which.is.max'
.rawpCheckExons: no visible binding for global variable
'affylmGUIenvironment'
.rawpCheckExons: no visible binding for global variable
'.affylmGUIglobals'
addAnnLib: no visible binding for global variable
'affylmGUIenvironment'
addAnnLib: no visible binding for global variable '.affylmGUIglobals'
addAnnLib : onOK: no visible binding for global variable
'affylmGUIenvironment'
addAnnLib : onOK: no visible binding for global variable
'.affylmGUIglobals'
addAnnLib : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
affyPlotMA: no visible binding for global variable
'affylmGUIenvironment'
affyPlotMA: no visible binding for global variable '.affylmGUIglobals'
affyPlotMA : plotFunction: no visible binding for global variable
'.affylmGUIglobals'
affyPlotMA : CopyToClip: no visible global function definition for
'tkrreplot'
affyPlotMA: no visible global function definition for 'tkrplot'
aptFolder: no visible binding for global variable '.affylmGUIglobals'
aptFolder: no visible binding for global variable
'affylmGUIenvironment'
AptMidas: no visible binding for global variable 'affylmGUIenvironment'
AptMidas: no visible binding for global variable '.affylmGUIglobals'
AptMidas: no visible binding for global variable 'tmp'
AptMidas: no visible binding for global variable 'tt'
biomartFilter: no visible binding for global variable
'.affylmGUIglobals'
buildingLocalAnnotation: no visible binding for global variable
'.affylmGUIglobals'
buildingLocalAnnotation : onOK: no visible binding for global variable
'affylmGUIenvironment'
buildingLocalAnnotation : <anonymous>: no visible binding for global
variable '.affylmGUIglobals'
buildingLocalAnnotation: no visible binding for global variable
'affylmGUIenvironment'
buildingLocalAnnotation : onOK: no visible binding for '<<-' assignment
to 'ReturnNetaffx'
buildingLocalAnnotation : onOK: no visible binding for global variable
'.affylmGUIglobals'
buildingLocalAnnotation : onCancel: no visible binding for global
variable '.affylmGUIglobals'
buildingLocalAnnotation: no visible binding for global variable
'ReturnNetaffx'
changeMenu: no visible binding for global variable
'affylmGUIenvironment'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
chooseEDir: no visible binding for global variable '.affylmGUIglobals'
colExtract: no visible binding for global variable '.affylmGUIglobals'
colExtract : onOK: no visible binding for global variable
'affylmGUIenvironment'
colExtract : onOK: no visible binding for global variable
'.affylmGUIglobals'
colExtract : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
colExtract: no visible binding for global variable
'affylmGUIenvironment'
combineGeoMSF: no visible binding for global variable
'.affylmGUIglobals'
combineGeoMSF : onOK: no visible binding for global variable
'.affylmGUIglobals'
combineGeoMSF : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
combineGeoMSF: no visible binding for global variable
'affylmGUIenvironment'
ComputeContrasts: no visible binding for global variable
'affylmGUIenvironment'
ComputeLinearModelFit: no visible binding for global variable
'affylmGUIenvironment'
ComputeLinearModelFit: no visible binding for global variable
'.affylmGUIglobals'
consistentFilters: no visible binding for global variable
'.affylmGUIglobals'
consistentFilters: no visible binding for global variable
'affylmGUIenvironment'
consistentFilters : onOK: no visible binding for '<<-' assignment to
'ReturnFilter'
consistentFilters : onOK: no visible binding for global variable
'.affylmGUIglobals'
consistentFilters : onCancel: no visible binding for global variable
'.affylmGUIglobals'
consistentFilters : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
consistentFilters: no visible binding for global variable
'ReturnFilter'
consistentFilters : onOK: no visible binding for global variable
'affylmGUIenvironment'
cosieWrapper: no visible binding for global variable
'affylmGUIenvironment'
cosieWrapper: no visible binding for global variable
'.affylmGUIglobals'
createGeoTarget: no visible binding for global variable
'.affylmGUIglobals'
crosshybFilter: no visible binding for global variable
'affylmGUIenvironment'
crosshybFilter: no visible binding for global variable
'.affylmGUIglobals'
crosshybFilter : onCancel: no visible binding for global variable
'.affylmGUIglobals'
crosshybFilter : onOK: no visible binding for global variable
'.affylmGUIglobals'
crosshybFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
dabgFilter: no visible binding for global variable
'affylmGUIenvironment'
dabgFilter: no visible binding for global variable '.affylmGUIglobals'
dabgFilter : onOK: no visible binding for '<<-' assignment to
'ReturnVal'
dabgFilter : onOK: no visible binding for global variable
'.affylmGUIglobals'
dabgFilter : onCancel: no visible binding for '<<-' assignment to
'ReturnVal'
dabgFilter : onCancel: no visible binding for global variable
'.affylmGUIglobals'
dabgFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
dabgFilter: no visible binding for global variable 'ReturnVal'
delete.ML: no visible binding for global variable
'affylmGUIenvironment'
delete.ML: no visible binding for global variable '.affylmGUIglobals'
deleteLocalData: no visible binding for global variable
'.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot : onOK: no visible binding for '<<-' assignment to 'ReturnVal'
dfMAplot : onOK: no visible binding for global variable
'.affylmGUIglobals'
dfMAplot : onCancel: no visible binding for global variable
'.affylmGUIglobals'
dfMAplot : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
dfMAplot: no visible binding for global variable 'ReturnVal'
EG2probeset: no visible binding for global variable '.affylmGUIglobals'
EG2probeset: no visible binding for global variable
'affylmGUIenvironment'
EG2probeset : OpenAFile: no visible binding for global variable
'.affylmGUIglobals'
erankProdAltSpl: no visible binding for global variable
'affylmGUIenvironment'
erankProdAltSpl: no visible binding for global variable
'.affylmGUIglobals'
erankProdAltSpl : onCancel: no visible binding for global variable
'.affylmGUIglobals'
erankProdAltSpl : onOK: no visible binding for global variable
'.affylmGUIglobals'
erankProdAltSpl : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
erankProdAltSpl: no visible binding for '<<-' assignment to 'ReturnVal'
erankProdAltSpl : onOK: no visible binding for '<<-' assignment to
'ReturnVal'
erankProdAltSpl: no visible binding for global variable 'ReturnVal'
erankProdAltSplFilter: no visible binding for global variable
'affylmGUIenvironment'
erankProdAltSplFilter: no visible binding for global variable
'.affylmGUIglobals'
erankProdAltSplFilter : onOK: no visible binding for global variable
'affylmGUIenvironment'
erankProdAltSplFilter : <anonymous>: no visible binding for global
variable '.affylmGUIglobals'
exonContrasts: no visible binding for global variable
'affylmGUIenvironment'
exonsSpecific2as: no visible binding for global variable
'.affylmGUIglobals'
exonsSpecific2as: no visible binding for global variable
'affylmGUIenvironment'
exonTopTableExtract: no visible binding for global variable
'affylmGUIenvironment'
exonTopTableExtract: no visible binding for global variable
'.affylmGUIglobals'
exonTopTableExtract : onOK: no visible binding for global variable
'affylmGUIenvironment'
exonTopTableExtract : <anonymous>: no visible binding for global
variable '.affylmGUIglobals'
ExportfeatureNames: no visible binding for global variable
'affylmGUIenvironment'
ExportNormalizedExpressionValues: no visible binding for global
variable 'affylmGUIenvironment'
ExportNormalizedExpressionValues1: no visible binding for global
variable 'affylmGUIenvironment'
extractAffyids: no visible binding for global variable
'.affylmGUIglobals'
extractAffyids: no visible binding for global variable
'affylmGUIenvironment'
extractAffyids : onOK: no visible binding for global variable
'affylmGUIenvironment'
extractAffyids : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
extractAffyids : OpenAFile: no visible binding for global variable
'.affylmGUIglobals'
filteringTable: no visible binding for global variable
'.affylmGUIglobals'
geneExonLibs: no visible binding for global variable
'affylmGUIenvironment'
geneExonLibs: no visible binding for global variable
'.affylmGUIglobals'
GetNormalizationMethod: no visible binding for global variable
'.affylmGUIglobals'
GetNormalizationMethod : onCancel: no visible binding for global
variable '.affylmGUIglobals'
GetNormalizationMethod : onOK: no visible binding for global variable
'.affylmGUIglobals'
GetNormalizationMethod : <anonymous>: no visible binding for global
variable '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
'.affylmGUIglobals'
GOenrichment: no visible binding for global variable
'affylmGUIenvironment'
GOenrichment : onOK: no visible binding for '<<-' assignment to
'ReturnVal'
GOenrichment : onOK: no visible binding for global variable
'.affylmGUIglobals'
GOenrichment : onCancel: no visible binding for global variable
'.affylmGUIglobals'
GOenrichment : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
GOenrichment: no visible binding for global variable 'ReturnVal'
GOenrichment : OpenAFile: no visible binding for global variable
'.affylmGUIglobals'
initialize.extAffylmGUI: no visible binding for global variable
'affylmGUIenvironment'
initialize.extAffylmGUI: no visible binding for global variable
'.affylmGUIglobals'
inspecting.one.splice.index: no visible binding for global variable
'.affylmGUIglobals'
inspecting.one.splice.index: no visible binding for global variable
'affylmGUIenvironment'
inspecting.one.splice.index : onOK: no visible binding for global
variable 'affylmGUIenvironment'
inspecting.one.splice.index : <anonymous>: no visible binding for
global variable '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
'.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
'affylmGUIenvironment'
intensityFilter: no visible binding for global variable
'.affylmGUIglobals'
intensityFilter : onOK: no visible binding for '<<-' assignment to
'ReturnVal'
intensityFilter : onOK: no visible binding for global variable
'.affylmGUIglobals'
intensityFilter : onCancel: no visible binding for '<<-' assignment to
'ReturnVal'
intensityFilter : onCancel: no visible binding for global variable
'.affylmGUIglobals'
intensityFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
intensityFilter: no visible binding for global variable 'ReturnVal'
intronicBg: no visible binding for global variable
'affylmGUIenvironment'
intronicBg: no visible binding for global variable '.affylmGUIglobals'
intronicBg : onOK: no visible binding for global variable
'affylmGUIenvironment'
intronicBg : onOK: no visible binding for global variable
'.affylmGUIglobals'
intronicBg : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
IPAlistFilter: no visible binding for global variable
'affylmGUIenvironment'
IPAlistFilter: no visible binding for global variable
'.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter : onCancel: no visible binding for global variable
'.affylmGUIglobals'
iqrFilter : onOK: no visible binding for global variable
'.affylmGUIglobals'
iqrFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
largedatasetNorm: no visible binding for global variable
'affylmGUIenvironment'
largedatasetNorm: no visible binding for global variable
'.affylmGUIglobals'
largedatasetNorm : onCancel: no visible binding for global variable
'.affylmGUIglobals'
largedatasetNorm : onOK: no visible binding for global variable
'.affylmGUIglobals'
largedatasetNorm : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
libraryFilesDir: no visible binding for global variable
'.affylmGUIglobals'
limmaExons: no visible binding for global variable
'affylmGUIenvironment'
limmaExons: no visible binding for global variable '.affylmGUIglobals'
listFilter: no visible binding for global variable
'affylmGUIenvironment'
listFilter: no visible binding for global variable '.affylmGUIglobals'
listFilter : OpenAFile: no visible binding for global variable
'.affylmGUIglobals'
makeBED15: no visible binding for global variable '.affylmGUIglobals'
mapping2ensembl: no visible binding for global variable
'.affylmGUIglobals'
mapping2ensembl: no visible binding for global variable
'affylmGUIenvironment'
mapping2ensembl: no visible binding for global variable
'crosshybhuex.annotation'
mapping2ensembl: no visible binding for global variable
'crosshybmoex.annotation'
mapping2ensembl: no visible binding for global variable
'crosshybraex.annotation'
mapping2exon: no visible binding for global variable
'.affylmGUIglobals'
mapping2exon: no visible binding for global variable
'affylmGUIenvironment'
mapping2RefSeq: no visible binding for global variable
'.affylmGUIglobals'
mapping2RefSeq: no visible binding for global variable
'affylmGUIenvironment'
masigpro: no visible binding for global variable 'affylmGUIenvironment'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro : onOK: no visible binding for global variable
'.affylmGUIglobals'
masigpro : onCancel: no visible binding for global variable
'.affylmGUIglobals'
masigpro : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
masigpro.edesign: no visible binding for global variable
'affylmGUIenvironment'
masigpro.edesign: no visible binding for global variable
'.affylmGUIglobals'
masigpro.edesign : onClose: no visible binding for global variable
'.affylmGUIglobals'
masigpro.edesign : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
masigpro.view: no visible binding for global variable
'affylmGUIenvironment'
masigpro.view: no visible binding for global variable
'.affylmGUIglobals'
masigpro.view : onCancel: no visible binding for global variable
'.affylmGUIglobals'
masigpro.view : onOK: no visible binding for global variable
'.affylmGUIglobals'
masigpro.view : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
masigpro.view : plotFunction: no visible binding for global variable
'include'
masigpro.view: no visible global function definition for 'tkrplot'
masigpro.view : onOK: no visible binding for global variable
'affylmGUIenvironment'
metaArrayIC: no visible binding for global variable
'affylmGUIenvironment'
metaArrayIC: no visible binding for global variable '.affylmGUIglobals'
metaArrayMerge : OpenAFile: no visible binding for global variable
'.affylmGUIglobals'
metaArrayMerge: no visible binding for global variable
'affylmGUIenvironment'
metaArrayMerge: no visible binding for global variable
'.affylmGUIglobals'
metaArrayMerge : onCancel: no visible binding for global variable
'.affylmGUIglobals'
metaArrayMerge : onOK: no visible binding for global variable
'.affylmGUIglobals'
metaArrayMerge : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
midasFilter: no visible binding for global variable
'affylmGUIenvironment'
midasFilter: no visible binding for global variable '.affylmGUIglobals'
midasFilter : onOK: no visible binding for global variable
'affylmGUIenvironment'
midasFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
ML.edesign: no visible binding for global variable
'affylmGUIenvironment'
ML.edesign: no visible binding for global variable '.affylmGUIglobals'
ML.edesign : onClose: no visible binding for global variable
'.affylmGUIglobals'
ML.edesign : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
myExpresso: no visible binding for global variable
'affylmGUIenvironment'
myExpresso: no visible binding for global variable '.affylmGUIglobals'
NewLimmaFile: no visible binding for global variable
'affylmGUIenvironment'
NormalizeNow: no visible binding for global variable
'affylmGUIenvironment'
NormalizeNow: no visible binding for global variable
'.affylmGUIglobals'
normBoxplot: no visible binding for global variable
'affylmGUIenvironment'
normBoxplot: no visible binding for global variable '.affylmGUIglobals'
ocPlotHist: no visible binding for global variable
'affylmGUIenvironment'
ocPlotHist: no visible binding for global variable '.affylmGUIglobals'
ocPlotHist : onCancel: no visible binding for global variable
'.affylmGUIglobals'
ocPlotHist : onOK: no visible binding for global variable
'.affylmGUIglobals'
ocPlotHist : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
ocPlotPCA: no visible binding for global variable
'affylmGUIenvironment'
ocPlotPCA: no visible binding for global variable '.affylmGUIglobals'
ocPlotPCA : onCancel: no visible binding for global variable
'.affylmGUIglobals'
ocPlotPCA : onOK: no visible binding for global variable
'.affylmGUIglobals'
ocPlotPCA : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
'.affylmGUIglobals'
OpenAFile: no visible binding for global variable '.affylmGUIglobals'
OpenAGeoFile: no visible binding for global variable
'.affylmGUIglobals'
OpenAGeoFile: no visible binding for global variable
'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
'affylmGUIenvironment'
OpenBeadStudioFiles : onOK: no visible binding for global variable
'affylmGUIenvironment'
OpenBeadStudioFiles: no visible binding for global variable
'affylmGUIenvironment'
OpenCDFandTargetsfiles : onOK: no visible binding for global variable
'affylmGUIenvironment'
OpenCDFandTargetsfiles: no visible binding for global variable
'affylmGUIenvironment'
OpenExonandTargetsfiles : onOK: no visible binding for global variable
'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for '<<-' assignment to
'ReturnValX'
OpenExonandTargetsfiles : onOK: no visible binding for '<<-' assignment
to 'ReturnValX'
OpenExonandTargetsfiles: no visible binding for global variable
'ReturnValX'
OpenGeoFiles : onOK: no visible binding for global variable
'affylmGUIenvironment'
OpenGeoFiles: no visible binding for global variable
'affylmGUIenvironment'
OpenGeoFiles: no visible binding for global variable 'geoVSbioc'
OpenLargefiles : onOK: no visible binding for global variable
'affylmGUIenvironment'
OpenLargefiles: no visible binding for global variable
'affylmGUIenvironment'
plierToZero: no visible binding for global variable
'affylmGUIenvironment'
plierToZero: no visible binding for global variable '.affylmGUIglobals'
plotGO: no visible binding for global variable 'affylmGUIenvironment'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO : onOK: no visible binding for global variable
'affylmGUIenvironment'
plotGO : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
plotGO : onCancel: no visible binding for global variable
'.affylmGUIglobals'
plotGO : onOK: no visible binding for global variable
'.affylmGUIglobals'
PlotOptionsv1: no visible binding for global variable
'.affylmGUIglobals'
PlotOptionsv1 : onOK: no visible binding for global variable
'.affylmGUIglobals'
PlotOptionsv1 : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
plotVariantSI: no visible binding for global variable
'.affylmGUIglobals'
plotVariantSI : onOK: no visible binding for global variable
'affylmGUIenvironment'
plotVariantSI : onOK: no visible binding for global variable
'.affylmGUIglobals'
plotVariantSI : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
plotVariantSI: no visible binding for global variable
'affylmGUIenvironment'
rankingConversion: no visible binding for global variable
'affylmGUIenvironment'
rankingConversion: no visible binding for global variable
'.affylmGUIglobals'
rankProd: no visible binding for global variable 'affylmGUIenvironment'
rankProd: no visible binding for global variable '.affylmGUIglobals'
rankProd : onOK: no visible binding for '<<-' assignment to 'ReturnVal'
rankProd : onOK: no visible binding for global variable
'.affylmGUIglobals'
rankProd : onCancel: no visible binding for '<<-' assignment to
'ReturnVal'
rankProd : onCancel: no visible binding for global variable
'.affylmGUIglobals'
rankProd : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
rankProd: no visible binding for global variable 'ReturnVal'
rawBoxplotPN: no visible binding for global variable
'affylmGUIenvironment'
rawBoxplotPN: no visible binding for global variable
'.affylmGUIglobals'
rawpCheck: no visible binding for global variable
'affylmGUIenvironment'
rawpCheck: no visible binding for global variable '.affylmGUIglobals'
recoverUnfiltered: no visible binding for global variable
'.affylmGUIglobals'
recoverUnfiltered: no visible binding for global variable
'affylmGUIenvironment'
recoverUnfiltered: no visible binding for global variable 'x.exon'
refseqDownload: no visible binding for global variable
'.affylmGUIglobals'
refseqDownload: no visible binding for global variable
'affylmGUIenvironment'
retrievePSRseq: no visible binding for global variable
'.affylmGUIglobals'
retrievePSRseq: no visible binding for global variable
'affylmGUIenvironment'
reviqrFilter: no visible binding for global variable
'.affylmGUIglobals'
reviqrFilter : onCancel: no visible binding for global variable
'.affylmGUIglobals'
reviqrFilter : onOK: no visible binding for global variable
'.affylmGUIglobals'
reviqrFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
runningJetta: no visible binding for global variable
'.affylmGUIglobals'
runningJetta: no visible binding for global variable
'affylmGUIenvironment'
runningJetta: no visible binding for global variable 'tmp'
runningJetta : onOK: no visible binding for global variable
'.affylmGUIglobals'
runningJetta : onOK: no visible binding for global variable
'affylmGUIenvironment'
runningJetta : onCancel: no visible binding for global variable
'.affylmGUIglobals'
runningJetta : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
runningJetta: no visible global function definition for 'jetta.do.mads'
runningJetta: no visible global function definition for
'jetta.read.expression'
runningJetta: no visible global function definition for
'jetta.read.mads.output'
sample.size.evaluation: no visible binding for global variable
'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
'.affylmGUIglobals'
sample.size.evaluation : onOK: no visible binding for global variable
'affylmGUIenvironment'
sample.size.evaluation : <anonymous>: no visible binding for global
variable '.affylmGUIglobals'
sample.size.evaluation : common.sd: no visible binding for global
variable 'affylmGUIenvironment'
sample.size.evaluation : onCancel: no visible binding for global
variable '.affylmGUIglobals'
sample.size.evaluation : onOK: no visible binding for global variable
'.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
'affylmGUIenvironment'
sample.size.evaluation1: no visible binding for global variable
'.affylmGUIglobals'
sample.size.evaluation1 : onCancel: no visible binding for global
variable '.affylmGUIglobals'
sample.size.evaluation1 : onOK: no visible binding for global variable
'.affylmGUIglobals'
sample.size.evaluation1 : <anonymous>: no visible binding for global
variable '.affylmGUIglobals'
sample.size.evaluation1 : common.sd: no visible binding for global
variable 'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
'.affylmGUIglobals'
SetED: no visible binding for global variable '.affylmGUIglobals'
showDataset: no visible binding for global variable
'affylmGUIenvironment'
showTopTable: no visible binding for global variable
'affylmGUIenvironment'
showTopTable: no visible binding for global variable 'annlib'
siggenes: no visible binding for global variable 'affylmGUIenvironment'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes : onOK: no visible binding for global variable
'affylmGUIenvironment'
siggenes : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
simFilter: no visible binding for global variable '.affylmGUIglobals'
simFilter : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
spliceIndex: no visible binding for global variable
'affylmGUIenvironment'
spliceIndex: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable 'affylmGUIenvironment'
templA: no visible binding for global variable '.affylmGUIglobals'
templA : onCancel: no visible binding for global variable
'.affylmGUIglobals'
templA : onOK: no visible binding for global variable
'.affylmGUIglobals'
templA : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
trainTest: no visible binding for global variable
'affylmGUIenvironment'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : onOK: no visible binding for global variable
'.affylmGUIglobals'
trainTest : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
trainTest : onCancel: no visible binding for global variable
'.affylmGUIglobals'
trainTest: possible error in Try(x = exprs(testAffyData)): unused
argument(s) (x = exprs(testAffyData))
trainTest : onOK: no visible binding for global variable
'affylmGUIenvironment'
updateLibs: no visible binding for global variable '.affylmGUIglobals'
updateLibs: no visible global function definition for
'biocinstallRepos'
variantExons: no visible binding for global variable
'.affylmGUIglobals'
variantSI: no visible binding for global variable '.affylmGUIglobals'
variantSI: no visible binding for global variable
'affylmGUIenvironment'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram : onCancel: no visible binding for global variable
'.affylmGUIglobals'
VennDiagram : onOK: no visible binding for global variable
'.affylmGUIglobals'
VennDiagram : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
VennDiagram: no visible binding for global variable
'affylmGUIenvironment'
VennDiagram : plotFunction: no visible binding for global variable
'include'
VennDiagram: no visible global function definition for 'tkrplot'
whichKindOfArray: no visible binding for global variable
'affylmGUIenvironment'
whichKindOfArray: no visible binding for '<<-' assignment to
'ReturnVal'
whichKindOfArray: no visible binding for global variable
'.affylmGUIglobals'
whichKindOfArray : onOK: no visible binding for '<<-' assignment to
'ReturnVal'
whichKindOfArray : onOK: no visible binding for global variable
'.affylmGUIglobals'
whichKindOfArray : onCancel: no visible binding for global variable
'.affylmGUIglobals'
whichKindOfArray : <anonymous>: no visible binding for global variable
'.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable 'ReturnVal'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'oneChannelGUI' ...
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: limma
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: affy
Loading required package: affyio
Loading required package: widgetTools
Loading required package: DynDoc
Loading required package: tools
Loading required package: Category
Loading required package: AnnotationDbi
Loading required package: graph
Loading required package: DBI
** help
*** installing help indices
>>> Building/Updating help pages for package 'oneChannelGUI'
Formats: text html latex example
AptMidas text html latex
EG2probeset text html latex
GOenrichment text html latex
IPAlistFilter text html latex
ML.edesign text html latex
OpenBeadStudioFiles text html latex
OpenLargefiles text html latex
PlotOptionsv1 text html latex
VennDiagram text html latex
biomartFilter text html latex
buildingLocalAnnotation text html latex
colExtract text html latex
combineGeoMSF text html latex
consistentFilters text html latex
cosieHscore text html latex
cosieHsfull text html latex
cosieMmcore text html latex
cosieMmfull text html latex
cosieWrapper text html latex
createGeoTarget text html latex
crosshybFilter text html latex
crosshybhuex.annotation text html latex
crosshybmoex.annotation text html latex
crosshybraex.annotation text html latex
dfMAplot text html latex
erankProdAltSpl text html latex
erankProdAltSplFilterl text html latex
exonContrasts text html latex
exonTopTableExtract text html latex
exonsSpecific2as text html latex
extractAffyids text html latex
filteringTable text html latex
geneExonLibs text html latex
geoVSbioc text html latex
huex.annotation text html latex
huex.variantexons text html latex
hugene.annotation text html latex
inspecting.one.splice.index text html latex
inspecting.splice.index text html latex
intensityFilter text html latex
iqrFilter text html latex
limmaExons text html latex
listFilter text html latex
makeBED15 text html latex
mapping2RefSeq text html latex
mapping2ensembl text html latex
mapping2exon text html latex
masigpro text html latex
masigpro.edesign text html latex
masigpro.view text html latex
metaArrayIC text html latex
metaArrayMerge text html latex
moex.annotation text html latex
moex.variantexons text html latex
mogene.annotation text html latex
myExpresso text html latex
normBoxplot text html latex
ocPlotHist text html latex
ocPlotPCA text html latex
oneChannelGUI-package text html latex example
oneChannelGUI text html latex example
plierToZero text html latex
plotGO text html latex
plotVariantSI text html latex
raex.annotation text html latex
raex.variantexons text html latex
ragene.annotation text html latex
rankProd text html latex
rankingConversion text html latex
rawBoxplotPN text html latex
rawpCheck text html latex
refseqDownload text html latex
retrievePSRseq text html latex
reviqrFilter text html latex
runningJetta text html latex
sample.size.evaluation text html latex
sample.size.evaluation1 text html latex
showDataset text html latex
showTopTable text html latex
siggenes text html latex
simFilter text html latex
spliceIndex text html latex
targetWidget text html latex
templA text html latex
trainTest text html latex
updateLibs text html latex
variantExons text html latex
variantSI text html latex
** building package indices ...
* DONE (oneChannelGUI)