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Package 215/319HostnameOS / ArchBUILDCHECKBUILD BIN
pamr 1.42.0
Rob Tibshirani
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/pamr
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: pamr
Version: 1.42.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD INSTALL --build --library=pamr.buildbin-libdir pamr_1.42.0.tar.gz
StartedAt: 2009-10-20 19:09:29 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:09:41 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 11.6 seconds
RetCode: 0
Status: OK
PackageFile: pamr_1.42.0.zip
PackageFileSize: 1.328 MiB

Command output

* Installing *source* package 'pamr' ...

  Using auto-selected zip options '--use-zip-data --use-zip-help'

** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c cox_func.c -o cox_func.o
gfortran     -O3  -c knnimpute.f -o knnimpute.o
gcc -shared -s -o pamr.dll tmp.def cox_func.o knnimpute.o -lgfortran -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** data
** inst
** help
*** installing help indices
 >>> Building/Updating help pages for package 'pamr'
     Formats: text html latex example chm 
Note: removing empty section \source in file 'khan.Rd'
Note: removing empty section \format in file 'khan.Rd'
Note: removing empty section \references in file 'khan.Rd'
Note: removing empty section \source in file 'khan.Rd'
Note: removing empty section \format in file 'khan.Rd'
Note: removing empty section \references in file 'khan.Rd'
  khan                              text    html    latex           chm
Note: ignoring empty \keyword entries in file 'pamr.adaptthresh.Rd'
Note: ignoring empty \keyword entries in file 'pamr.adaptthresh.Rd'
  pamr.adaptthresh                  text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.batchadjust.Rd'
Note: removing empty section \references in file 'pamr.batchadjust.Rd'
Note: ignoring empty \keyword entries in file 'pamr.batchadjust.Rd'
Note: removing empty section \references in file 'pamr.batchadjust.Rd'
  pamr.batchadjust                  text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.confusion.Rd'
Note: removing empty section \references in file 'pamr.confusion.Rd'
Note: ignoring empty \keyword entries in file 'pamr.confusion.Rd'
Note: removing empty section \references in file 'pamr.confusion.Rd'
  pamr.confusion                    text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.confusion.survival.Rd'
Note: removing empty section \details in file 'pamr.confusion.survival.Rd'
Note: removing empty section \references in file 'pamr.confusion.survival.Rd'
Note: removing empty section \examples in file 'pamr.confusion.survival.Rd'
Note: ignoring empty \keyword entries in file 'pamr.confusion.survival.Rd'
Note: removing empty section \details in file 'pamr.confusion.survival.Rd'
Note: removing empty section \references in file 'pamr.confusion.survival.Rd'
Note: removing empty section \examples in file 'pamr.confusion.survival.Rd'
  pamr.confusion.survival           text    html    latex           chm
Note: ignoring empty \keyword entries in file 'pamr.cv.Rd'
Note: removing empty section \references in file 'pamr.cv.Rd'
Note: ignoring empty \keyword entries in file 'pamr.cv.Rd'
Note: removing empty section \references in file 'pamr.cv.Rd'
  pamr.cv                           text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.decorrelate.Rd'
Note: ignoring empty \keyword entries in file 'pamr.decorrelate.Rd'
  pamr.decorrelate                  text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.fdr.Rd'
Note: removing empty section \references in file 'pamr.fdr.Rd'
Note: ignoring empty \keyword entries in file 'pamr.fdr.Rd'
Note: removing empty section \references in file 'pamr.fdr.Rd'
  pamr.fdr                          text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.from.excel.Rd'
Note: removing empty section \references in file 'pamr.from.excel.Rd'
Note: ignoring empty \keyword entries in file 'pamr.from.excel.Rd'
Note: removing empty section \references in file 'pamr.from.excel.Rd'
  pamr.from.excel                   text    html    latex           chm
Note: ignoring empty \keyword entries in file 'pamr.geneplot.Rd'
Note: removing empty section \references in file 'pamr.geneplot.Rd'
Note: ignoring empty \keyword entries in file 'pamr.geneplot.Rd'
Note: removing empty section \references in file 'pamr.geneplot.Rd'
  pamr.geneplot                     text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.indeterminate.Rd'
Note: removing empty section \details in file 'pamr.indeterminate.Rd'
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Note: ignoring empty \keyword entries in file 'pamr.indeterminate.Rd'
Note: removing empty section \details in file 'pamr.indeterminate.Rd'
Note: removing empty section \references in file 'pamr.indeterminate.Rd'
  pamr.indeterminate                text    html    latex   example chm
  pamr.internal                     text    html    latex           chm
Note: ignoring empty \keyword entries in file 'pamr.knnimpute.Rd'
Note: ignoring empty \keyword entries in file 'pamr.knnimpute.Rd'
  pamr.knnimpute                    text    html    latex           chm
Note: ignoring empty \keyword entries in file 'pamr.listgenes.Rd'
Note: removing empty section \references in file 'pamr.listgenes.Rd'
Note: ignoring empty \keyword entries in file 'pamr.listgenes.Rd'
Note: removing empty section \references in file 'pamr.listgenes.Rd'
  pamr.listgenes                    text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.makeclasses.Rd'
Note: removing empty section \references in file 'pamr.makeclasses.Rd'
Note: ignoring empty \keyword entries in file 'pamr.makeclasses.Rd'
Note: removing empty section \references in file 'pamr.makeclasses.Rd'
  pamr.makeclasses                  text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.menu.Rd'
Note: removing empty section \value in file 'pamr.menu.Rd'
Note: removing empty section \references in file 'pamr.menu.Rd'
Note: ignoring empty \keyword entries in file 'pamr.menu.Rd'
Note: removing empty section \value in file 'pamr.menu.Rd'
Note: removing empty section \references in file 'pamr.menu.Rd'
  pamr.menu                         text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.plotcen.Rd'
Note: removing empty section \references in file 'pamr.plotcen.Rd'
Note: ignoring empty \keyword entries in file 'pamr.plotcen.Rd'
Note: removing empty section \references in file 'pamr.plotcen.Rd'
  pamr.plotcen                      text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.plotcv.Rd'
Note: removing empty section \value in file 'pamr.plotcv.Rd'
Note: removing empty section \references in file 'pamr.plotcv.Rd'
Note: ignoring empty \keyword entries in file 'pamr.plotcv.Rd'
Note: removing empty section \value in file 'pamr.plotcv.Rd'
Note: removing empty section \references in file 'pamr.plotcv.Rd'
  pamr.plotcv                       text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.plotcvprob.Rd'
Note: removing empty section \value in file 'pamr.plotcvprob.Rd'
Note: removing empty section \references in file 'pamr.plotcvprob.Rd'
Note: ignoring empty \keyword entries in file 'pamr.plotcvprob.Rd'
Note: removing empty section \value in file 'pamr.plotcvprob.Rd'
Note: removing empty section \references in file 'pamr.plotcvprob.Rd'
  pamr.plotcvprob                   text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.plotfdr.Rd'
Note: removing empty section \value in file 'pamr.plotfdr.Rd'
Note: removing empty section \references in file 'pamr.plotfdr.Rd'
Note: ignoring empty \keyword entries in file 'pamr.plotfdr.Rd'
Note: removing empty section \value in file 'pamr.plotfdr.Rd'
Note: removing empty section \references in file 'pamr.plotfdr.Rd'
  pamr.plotfdr                      text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.plotstrata.Rd'
Note: removing empty section \value in file 'pamr.plotstrata.Rd'
Note: removing empty section \details in file 'pamr.plotstrata.Rd'
Note: removing empty section \references in file 'pamr.plotstrata.Rd'
Note: ignoring empty \keyword entries in file 'pamr.plotstrata.Rd'
Note: removing empty section \value in file 'pamr.plotstrata.Rd'
Note: removing empty section \details in file 'pamr.plotstrata.Rd'
Note: removing empty section \references in file 'pamr.plotstrata.Rd'
  pamr.plotstrata                   text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.plotsurvival.Rd'
Note: removing empty section \value in file 'pamr.plotsurvival.Rd'
Note: removing empty section \details in file 'pamr.plotsurvival.Rd'
Note: removing empty section \references in file 'pamr.plotsurvival.Rd'
Note: ignoring empty \keyword entries in file 'pamr.plotsurvival.Rd'
Note: removing empty section \value in file 'pamr.plotsurvival.Rd'
Note: removing empty section \details in file 'pamr.plotsurvival.Rd'
Note: removing empty section \references in file 'pamr.plotsurvival.Rd'
  pamr.plotsurvival                 text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.predict.Rd'
Note: removing empty section \references in file 'pamr.predict.Rd'
Note: ignoring empty \keyword entries in file 'pamr.predict.Rd'
Note: removing empty section \references in file 'pamr.predict.Rd'
  pamr.predict                      text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.predictmany.Rd'
Note: removing empty section \details in file 'pamr.predictmany.Rd'
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Note: ignoring empty \keyword entries in file 'pamr.predictmany.Rd'
Note: removing empty section \details in file 'pamr.predictmany.Rd'
Note: removing empty section \references in file 'pamr.predictmany.Rd'
  pamr.predictmany                  text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.surv.to.class2.Rd'
Note: ignoring empty \keyword entries in file 'pamr.surv.to.class2.Rd'
  pamr.surv.to.class2               text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.test.errors.surv.compute.Rd'
Note: removing empty section \references in file 'pamr.test.errors.surv.compute.Rd'
Note: ignoring empty \keyword entries in file 'pamr.test.errors.surv.compute.Rd'
Note: removing empty section \references in file 'pamr.test.errors.surv.compute.Rd'
  pamr.test.errors.surv.compute     text    html    latex   example chm
Note: ignoring empty \keyword entries in file 'pamr.to.excel.Rd'
Note: ignoring empty \keyword entries in file 'pamr.to.excel.Rd'
  pamr.to.excel                     text    html    latex           chm
Note: ignoring empty \keyword entries in file 'pamr.train.Rd'
Note: ignoring empty \keyword entries in file 'pamr.train.Rd'
  pamr.train                        text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\RtmplZ9vc6\R.INSTALL678418be\pamr\chm\pamr.chm





Compile time: 0 minutes, 0 seconds

29	Topics

55	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.4-bioc\tmpdir\RtmplZ9vc6\R.INSTALL678418be\pamr\chm\pamr.chm, 53,491 bytes

Compression decreased file by 49,094 bytes.

** building package indices ...
** MD5 sums
packaged installation of 'pamr' as pamr_1.42.0.zip
* DONE (pamr)