pdInfoBuilder 1.8.1
Benilton Carvalho
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/pdInfoBuilder | | Last Changed Rev: 39118 / Revision: 42512 | | Last Changed Date: 2009-04-24 10:28:18 -0700 (Fri, 24 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/pdInfoBuilder.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pdInfoBuilder/DESCRIPTION' ... OK
* this is package 'pdInfoBuilder' version '1.8.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pdInfoBuilder' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
parseCdfCelProbe: no visible binding for global variable 'fsetid'
parseCdfCelProbe: no visible binding for global variable 'isPm'
parseNgsTrio: no visible binding for global variable 'mismatch'
parsePgfClf: no visible binding for global variable 'pstype'
parsePgfClf: no visible binding for global variable 'ptype'
makePdInfoPackage,AffySTPDInfoPkgSeed: no visible binding for global
variable 'exonTranscriptionMmFeatureSchema'
makePdInfoPackage,NgsExpressionPDInfoPkgSeed: no visible binding for
global variable 'ngsExprMmFeatureSchema'
makePdInfoPackage,NgsTilingPDInfoPkgSeed: no visible binding for global
variable 'tiledRegionMmFeatureSchema'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'pdInfoBuilder' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c pdInfoBuilder.c -o pdInfoBuilder.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o pdInfoBuilder.so pdInfoBuilder.o -L/home/biocbuild/bbs-2.4-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: oligoClasses
Loading required package: preprocessCore
Welcome to oligo version 1.8.3
** help
*** installing help indices
>>> Building/Updating help pages for package 'pdInfoBuilder'
Formats: text html latex example
AffyExpressionPDInfoPkgSeed-class text html latex example
AffySNPCNVPDInfoPkgSeed-class text html latex example
AffySNPCNVPDInfoPkgSeed2-class text html latex example
AffySNPPDInfoPkgSeed-class text html latex example
AffySNPPDInfoPkgSeed2-class text html latex example
AffySTPDInfoPkgSeed-class text html latex example
AffyTilingPDInfoPkgSeed-class text html latex example
NgsExpressionPDInfoPkgSeed-class text html latex example
NgsTilingPDInfoPkgSeed-class text html latex example
NimbleGenPDInfoPkgSeed-class text html latex example
chipName text html latex
getGeometry text html latex
makePdInfoPackage text html latex example
** building package indices ...
* DONE (pdInfoBuilder)