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Package 224/319HostnameOS / ArchBUILDCHECKBUILD BIN
pdmclass 1.16.0
James W. MacDonald
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/pdmclass
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
Package: pdmclass
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD check --no-vignettes pdmclass_1.16.0.tar.gz
StartedAt: 2009-10-20 18:28:43 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:30:23 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 100.3 seconds
RetCode: 0
Status: OK
CheckDir: pdmclass.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/pdmclass.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'pdmclass/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pdmclass' version '1.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pdmclass' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

pdmclass.Rcheck/00install.out:

* Installing *source* package ‘pdmclass’ ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: class
** help
*** installing help indices
 >>> Building/Updating help pages for package 'pdmclass'
     Formats: text html latex example 
  my.svd                            text    html    latex
  pdmClass                          text    html    latex   example
  pdmClass.cv                       text    html    latex   example
  pdmGenes                          text    html    latex   example
  pls1c                             text    html    latex
  predict.pls                       text    html    latex   example
  svdpls1c                          text    html    latex
  svdr                              text    html    latex
** building package indices ...
* DONE (pdmclass)