plier 1.14.0
Crispin Miller
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/plier | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/plier.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plier/DESCRIPTION' ... OK
* this is package 'plier' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plier' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* Installing *source* package 'plier' ...
** libs
making DLL ...
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c affyplier.cpp -o affyplier.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c plier_impl.cpp -o plier_impl.o
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c plieralg.cpp -o plieralg.o
plieralg.cpp: In function 'long int NewtonPlier(plier_data*, double&)':
plieralg.cpp:910: warning: 'LogLikelihood' may be used uninitialized in this function
plieralg.cpp: At global scope:
plieralg.cpp:49: warning: 'g_ErrorCode' defined but not used
g++ -I"e:/biocbld/bbs-2.4-bioc/R/include" -O2 -Wall -c rwrapper.cpp -o rwrapper.o
g++ -shared -s -o plier.dll tmp.def affyplier.o plier_impl.o plieralg.o rwrapper.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
*** installing help indices
>>> Building/Updating help pages for package 'plier'
Formats: text html latex example chm
Note: removing empty section \examples in file 'justPlier.Rd'
Note: removing empty section \examples in file 'justPlier.Rd'
justPlier text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\PLIER~1.RCH\00_PKG~1\plier\chm\plier.chm
Compile time: 0 minutes, 0 seconds
2 Topics
2 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\PLIER~1.RCH\00_PKG~1\plier\chm\plier.chm, 17,246 bytes
Compression increased file by 7,756 bytes.
** building package indices ...
** MD5 sums
* DONE (plier)