prada 1.20.0
Florian Hahne
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/prada | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/prada.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'prada/DESCRIPTION' ... OK
* this is package 'prada' version '1.20.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'prada' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gatePoints: no visible binding for global variable 'prev'
killProgress: no visible binding for global variable
'.tkprogress.canceled'
killProgress: no visible binding for global variable
'.tkprogress.window'
progress: no visible binding for global variable '.tkprogress.window'
progress: no visible binding for '<<-' assignment to
'.tkprogress.labelText'
progress: no visible binding for global variable
'.tkprogress.labelText'
progress: no visible binding for global variable '.tkprogress.iterator'
progress: no visible binding for global variable
'.tkprogress.fallbackIterator'
progress : <anonymous>: no visible binding for '<<-' assignment to
'.tkprogress.canceled'
updateProgress: no visible binding for '<<-' assignment to
'.tkprogress.iterator'
updateProgress: no visible binding for global variable
'.tkprogress.iterator'
updateProgress: no visible binding for '<<-' assignment to
'.tkprogress.fallbackIterator'
updateProgress: no visible binding for global variable
'.tkprogress.fallbackIterator'
updateProgress: no visible binding for '<<-' assignment to
'.tkprogress.labelText'
updateProgress: no visible binding for global variable
'.tkprogress.labelText'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'prada' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c inPolygon.c -o inPolygon.o
gcc -shared -s -o prada.dll tmp.def inPolygon.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
Creating a new generic function for "split" in "prada"
** help
*** installing help indices
>>> Building/Updating help pages for package 'prada'
Formats: text html latex example chm
analysePlate text html latex example chm
as.all text html latex example chm
barploterrbar text html latex example chm
Note: ignoring empty \keyword entries in file 'combineFrames.Rd'
Note: removing empty section \details in file 'combineFrames.Rd'
Note: removing empty section \seealso in file 'combineFrames.Rd'
Note: ignoring empty \keyword entries in file 'combineFrames.Rd'
Note: removing empty section \details in file 'combineFrames.Rd'
Note: removing empty section \seealso in file 'combineFrames.Rd'
combineFrames text html latex example chm
csApply text html latex example chm
cytoFrame-class text html latex example chm
cytoSet-class text html latex example chm
data-cytoFrame text html latex example chm
data-cytoSet text html latex example chm
Note: ignoring empty \keyword entries in file 'devDims.Rd'
Note: ignoring empty \keyword entries in file 'devDims.Rd'
devDims text html latex example chm
Note: ignoring empty \keyword entries in file 'devRes.Rd'
Note: ignoring empty \keyword entries in file 'devRes.Rd'
devRes text html latex example chm
Note: ignoring empty \keyword entries in file 'fitNorm2.Rd'
Note: ignoring empty \keyword entries in file 'fitNorm2.Rd'
fitNorm2 text html latex example chm
gate-class text html latex example chm
gateSet-class text html latex example chm
getPradaPar text html latex example chm
new-internal text html latex chm
Note: ignoring empty \keyword entries in file 'plotNorm2.Rd'
Note: ignoring empty \keyword entries in file 'plotNorm2.Rd'
plotNorm2 text html latex example chm
plotPlate text html latex example chm
readCytoSet text html latex example chm
readFCS text html latex example chm
Note: removing empty section \examples in file 'readFCSaux.Rd'
Note: removing empty section \examples in file 'readFCSaux.Rd'
readFCSaux text html latex chm
Note: ignoring empty \keyword entries in file 'removeCensored.Rd'
Note: removing empty section \seealso in file 'removeCensored.Rd'
Note: ignoring empty \keyword entries in file 'removeCensored.Rd'
Note: removing empty section \seealso in file 'removeCensored.Rd'
removeCensored text html latex example chm
Note: removing empty section \seealso in file 'tcltkProgress.Rd'
Note: removing empty section \seealso in file 'tcltkProgress.Rd'
tcltkProgress text html latex example chm
threePanelPlot text html latex example chm
Note: ignoring empty \keyword entries in file 'thresholds.Rd'
Note: removing empty section \seealso in file 'thresholds.Rd'
Note: ignoring empty \keyword entries in file 'thresholds.Rd'
Note: removing empty section \seealso in file 'thresholds.Rd'
thresholds text html latex example chm
touchFCS text html latex chm
Note: ignoring empty \keyword entries in file 'vpLocation.Rd'
Note: ignoring empty \keyword entries in file 'vpLocation.Rd'
vpLocation text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\PRADA~1.RCH\00_PKG~1\prada\chm\prada.chm
Compile time: 0 minutes, 0 seconds
28 Topics
184 Local links
11 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\PRADA~1.RCH\00_PKG~1\prada\chm\prada.chm, 59,096 bytes
Compression decreased file by 75,807 bytes.
** building package indices ...
** MD5 sums
* DONE (prada)