preprocessCore 1.6.0
Benjamin Milo Bolstad
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/preprocessCore | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* Installing *source* package 'preprocessCore' ...
Using auto-selected zip options ''
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WARNING: this package has a configure script
It probably needs manual configuration
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** libs
making DLL ...
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c R_colSummarize.c -o R_colSummarize.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c R_plmd_interfaces.c -o R_plmd_interfaces.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c R_plmr_interfaces.c -o R_plmr_interfaces.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c R_rlm_interfaces.c -o R_rlm_interfaces.o
R_rlm_interfaces.c: In function 'R_medianpolish_rma_default_model':
R_rlm_interfaces.c:273: warning: unused variable 'se'
R_rlm_interfaces.c:272: warning: unused variable 'weights'
R_rlm_interfaces.c: In function 'R_rlm_rma_given_probe_effects':
R_rlm_interfaces.c:391: warning: unused variable 'i'
R_rlm_interfaces.c: In function 'R_wrlm_rma_given_probe_effects':
R_rlm_interfaces.c:475: warning: unused variable 'i'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c R_subColSummarize.c -o R_subColSummarize.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c avg.c -o avg.o
avg.c: In function 'colaverage_no_copy':
avg.c:90: warning: unused variable 'i'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c avg_log.c -o avg_log.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c biweight.c -o biweight.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c init_package.c -o init_package.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c lm.c -o lm.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c log_avg.c -o log_avg.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c log_median.c -o log_median.o
log_median.c: In function 'logmedian_no_copy':
log_median.c:138: warning: unused variable 'i'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c matrix_functions.c -o matrix_functions.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c median.c -o median.o
median.c: In function 'colmedian_no_copy':
median.c:146: warning: unused variable 'i'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c median_log.c -o median_log.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c medianpolish.c -o medianpolish.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c plmd.c -o plmd.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c plmr.c -o plmr.o
plmr.c:82: warning: 'XTWY_R' defined but not used
plmr.c:152: warning: 'XTWX_R' defined but not used
plmr.c:279: warning: 'XTWX_R_inv' defined but not used
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c psi_fns.c -o psi_fns.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c qnorm.c -o qnorm.o
qnorm.c: In function 'qnorm_c_determine_target':
qnorm.c:1813: warning: unused variable 'non_na'
qnorm.c:1808: warning: unused variable 'j'
qnorm.c: In function 'qnorm_c_determine_target_via_subset':
qnorm.c:2396: warning: unused variable 'non_na'
qnorm.c:2391: warning: unused variable 'j'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c rlm.c -o rlm.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c rlm_anova.c -o rlm_anova.o
rlm_anova.c: In function 'rlm_fit_anova_given_probe_effects':
rlm_anova.c:1205: warning: unused variable 'endprobe'
rlm_anova.c: In function 'rlm_compute_se_anova_given_probe_effects':
rlm_anova.c:1378: warning: unused variable 'varderivpsi'
rlm_anova.c:1378: warning: unused variable 'm'
rlm_anova.c:1378: warning: unused variable 'vs'
rlm_anova.c:1371: warning: unused variable 'scale'
rlm_anova.c:1370: warning: unused variable 'Kappa'
rlm_anova.c:1369: warning: unused variable 'sumderivpsi'
rlm_anova.c:1367: warning: unused variable 'sumpsi2'
rlm_anova.c:1366: warning: unused variable 'k1'
rlm_anova.c: In function 'rlm_wfit_anova_given_probe_effects':
rlm_anova.c:1457: warning: unused variable 'endprobe'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c rlm_se.c -o rlm_se.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c rma_background4.c -o rma_background4.o
rma_background4.c: In function 'R_rma_bg_correct':
rma_background4.c:457: warning: unused variable 'j'
rma_background4.c:456: warning: 'PMcopy' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c rma_common.c -o rma_common.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c weightedkerneldensity.c -o weightedkerneldensity.o
gcc -shared -s -o preprocessCore.dll tmp.def R_colSummarize.o R_plmd_interfaces.o R_plmr_interfaces.o R_rlm_interfaces.o R_subColSummarize.o avg.o avg_log.o biweight.o init_package.o lm.o log_avg.o log_median.o matrix_functions.o median.o median_log.o medianpolish.o plmd.o plmr.o psi_fns.o qnorm.o rlm.o rlm_anova.o rlm_se.o rma_background4.o rma_common.o weightedkerneldensity.o -lgfortran -LE:/biocbld/bbs-2.4-bioc/R/bin -lRlapack -LE:/biocbld/bbs-2.4-bioc/R/bin -lRblas -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'preprocessCore'
Formats: text html latex example chm
colSummarize text html latex example chm
normalize.quantiles text html latex chm
normalize.quantiles.in.blocks text html latex example chm
normalize.quantiles.robust text html latex chm
normalize.quantiles.target text html latex chm
Note: removing empty section \seealso in file 'rcModelPLMd.Rd'
Note: removing empty section \seealso in file 'rcModelPLMd.Rd'
rcModelPLMd text html latex example chm
Note: removing empty section \seealso in file 'rcModelPLMr.Rd'
Note: removing empty section \seealso in file 'rcModelPLMr.Rd'
rcModelPLMr text html latex example chm
Note: removing empty section \seealso in file 'rcModels.Rd'
Note: removing empty section \seealso in file 'rcModels.Rd'
rcModels text html latex example chm
rma.background.correct text html latex chm
subColSummarize text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpDxYtdN\R.INSTALL678418be\preprocessCore\chm\preprocessCore.chm
Compile time: 0 minutes, 0 seconds
11 Topics
50 Local links
6 Internet links
1 Graphic
Created e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpDxYtdN\R.INSTALL678418be\preprocessCore\chm\preprocessCore.chm, 31,471 bytes
Compression decreased file by 23,695 bytes.
** building package indices ...
** MD5 sums
packaged installation of 'preprocessCore' as preprocessCore_1.6.0.zip
* DONE (preprocessCore)