quantsmooth 1.10.0
Jan Oosting
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/quantsmooth | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/quantsmooth.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'quantsmooth/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'quantsmooth' version '1.10.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'quantsmooth' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
grid.chromosome: no visible binding for global variable 'chrom.bands'
lengthChromosome: no visible binding for global variable 'chrom.bands'
paintCytobands: no visible binding for global variable 'chrom.bands'
position2Cytoband: no visible binding for global variable 'chrom.bands'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'quantsmooth' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: SparseM
Package SparseM (0.80) loaded.
To cite, see citation("SparseM")
Attaching package: 'SparseM'
The following object(s) are masked from package:stats :
model.response
The following object(s) are masked from package:base :
backsolve,
chol
Attaching package: 'quantreg'
The following object(s) are masked from package:utils :
vignette
Loading required package: grid
** help
*** installing help indices
>>> Building/Updating help pages for package 'quantsmooth'
Formats: text html latex example chm
Chromosome14 text html latex chm
drawSimpleChrom text html latex example chm
getChangedIdx text html latex chm
getChangedRegions text html latex example chm
getLambdaMin text html latex example chm
grid.chromosome text html latex example chm
lengthChromosome text html latex example chm
numericCHR text html latex example chm
paintCytobands text html latex example chm
plotChromosome text html latex chm
plotSmoothed text html latex example chm
position2Cytoband text html latex example chm
prepareGenomePlot text html latex chm
quantsmooth text html latex example chm
quantsmooth.cv text html latex example chm
quantsmooth.seg text html latex example chm
scaleto text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\QUANTS~1.RCH\00_PKG~1\QUANTS~1\chm\quantsmooth.chm
Compile time: 0 minutes, 0 seconds
18 Topics
53 Local links
0 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\QUANTS~1.RCH\00_PKG~1\QUANTS~1\chm\quantsmooth.chm, 32,448 bytes
Compression decreased file by 20,124 bytes.
** building package indices ...
** MD5 sums
* DONE (quantsmooth)