rtracklayer 1.4.1
Michael Lawrence
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/rtracklayer | | Last Changed Rev: 40476 / Revision: 42512 | | Last Changed Date: 2009-07-02 10:16:44 -0700 (Thu, 02 Jul 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | [ WARNINGS ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/rtracklayer.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'rtracklayer/DESCRIPTION' ... OK
* this is package 'rtracklayer' version '1.4.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rtracklayer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
IRanges RangedDataList
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
/Users/biocbuild/bbs-2.4-bioc/meat/rtracklayer.Rcheck/00check.log
for details
* Installing *source* package ‘rtracklayer’ ...
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: bitops
** help
*** installing help indices
>>> Building/Updating help pages for package 'rtracklayer'
Formats: text html latex example
RangedData-methods text html latex example
RangesList-methods text html latex example
UCSCData-class text html latex
UCSCTableQuery-class text html latex example
activeView-methods text html latex
basicTrackLine-class text html latex
blocks-methods text html latex
browseGenome text html latex example
browserSession-class text html latex
browserSession-methods text html latex
browserView-class text html latex
browserView-methods text html latex example
browserViews-methods text html latex example
cpneTrack text html latex example
export text html latex example
export.gff text html latex example
genomeBrowsers text html latex
genomeSequence-methods text html latex
import text html latex example
import.gff text html latex example
laySequence-methods text html latex
layTrack-methods text html latex example
targets text html latex example
tracks-methods text html latex
ucscSession-class text html latex
ucscTrackLine-class text html latex
ucscTrackModes-class text html latex
ucscTrackModes-methods text html latex example
ucscView-class text html latex
wigTrackLine-class text html latex
** building package indices ...
* DONE (rtracklayer)