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Package 272/319HostnameOS / ArchBUILDCHECKBUILD BIN
sagenhaft 1.14.0
Tim Beissbarth
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/sagenhaft
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: sagenhaft
Version: 1.14.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD check --no-vignettes sagenhaft_1.14.0.tar.gz
StartedAt: 2009-10-20 17:52:08 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 17:54:08 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 119.6 seconds
RetCode: 0
Status: OK
CheckDir: sagenhaft.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.4-bioc/meat/sagenhaft.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sagenhaft/DESCRIPTION' ... OK
* this is package 'sagenhaft' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'sagenhaft' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
remove.sage.artifacts: no visible binding for global variable
  'SAGEartifacts'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

sagenhaft.Rcheck/00install.out:

* Installing *source* package 'sagenhaft' ...
** R
** data
** inst
** preparing package for lazy loading
Package SparseM (0.80) loaded.  
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 

** help
*** installing help indices
 >>> Building/Updating help pages for package 'sagenhaft'
     Formats: text html latex example 
  error.correction                  text    html    latex   example
  extract.lib                       text    html    latex   example
  sage.library                      text    html    latex   example
  sage.library.comparison           text    html    latex   example
  sage.test                         text    html    latex   example
  sage.utilities                    text    html    latex   example
  sagelibrary.simulate              text    html    latex   example
** building package indices ...
* DONE (sagenhaft)