siggenes 1.18.0
Holger Schwender
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/siggenes | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.4-bioc/meat/siggenes.Rcheck'
* using R version 2.9.2 Patched (2009-08-24 r49420)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'siggenes/DESCRIPTION' ... OK
* this is package 'siggenes' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'siggenes' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
filterALL: no visible global function definition for ‘filterALL2’
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package ‘siggenes’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Creating a new generic function for "print" in "siggenes"
Creating a new generic function for "identify" in "siggenes"
** help
*** installing help indices
>>> Building/Updating help pages for package 'siggenes'
Formats: text html latex example
EBAM-class text html latex example
FindA0-class text html latex
SAM-class text html latex example
chisq.ebam text html latex example
chisq.stat text html latex example
d.stat text html latex
delta.plot text html latex example
denspr text html latex
ebam text html latex example
find.a0 text html latex example
findDelta text html latex
fudge2 text html latex
help.ebam text html latex example
help.finda0 text html latex example
help.sam text html latex example
limma2sam text html latex
link.genes text html latex
link.siggenes text html latex
list.siggenes text html latex example
md.plot text html latex example
nclass.wand text html latex
pi0.est text html latex example
plotArguments text html latex
plotFindArguments text html latex
qvalue.cal text html latex example
rowWilcoxon text html latex
sam text html latex example
sam.plot2 text html latex example
samControl text html latex
siggenes-internal text html latex
siggenes2excel text html latex
siggenes2html text html latex
sumSAM-class text html latex
trend.ebam text html latex example
trend.stat text html latex example
wilc.ebam text html latex
wilc.stat text html latex
z.ebam text html latex
** building package indices ...
* DONE (siggenes)