simpleaffy 2.20.0
Crispin Miller
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/simpleaffy | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/simpleaffy.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'simpleaffy/DESCRIPTION' ... OK
* this is package 'simpleaffy' version '2.20.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'simpleaffy' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* Installing *source* package 'simpleaffy' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c simpleaffy.c -o simpleaffy.o
gcc -shared -s -o simpleaffy.dll tmp.def simpleaffy.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: Biostrings
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:base :
cbind,
duplicated,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rank,
rbind,
rep.int,
sapply,
sort,
table,
unique
** help
*** installing help indices
>>> Building/Updating help pages for package 'simpleaffy'
Formats: text html latex example chm
Note: removing empty section \seealso in file 'PairComp-class.Rd'
Note: removing empty section \seealso in file 'PairComp-class.Rd'
PairComp-class text html latex chm
QCStats-class text html latex chm
all.present text html latex example chm
all.present.in.group text html latex example chm
bg.correct.sa text html latex example chm
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call.exprs text html latex example chm
detection.p.val text html latex example chm
get.annotation text html latex example chm
Note: removing empty section \seealso in file 'get.array.indices.Rd'
Note: removing empty section \seealso in file 'get.array.indices.Rd'
get.array.indices text html latex example chm
get.array.subset text html latex example chm
get.array.subset.affy text html latex example chm
get.fold.change.and.t.test text html latex example chm
hmap.colors text html latex example chm
hmap.eset text html latex example chm
hmap.pc text html latex example chm
journalpng text html latex example chm
justMAS text html latex example chm
pairwise.comparison text html latex example chm
pairwise.filter text html latex example chm
plot.pairwise.comparison text html latex example chm
plot.qc.stats text html latex example chm
qc text html latex example chm
qc.affy text html latex example chm
Note: removing empty section \note in file 'qc.get.alpha1.Rd'
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qc.get.alpha1 text html latex example chm
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qc.get.array text html latex example chm
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qc.get.probes text html latex example chm
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qc.get.ratios text html latex example chm
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Note: removing empty section \note in file 'qc.get.spikes.Rd'
qc.get.spikes text html latex example chm
Note: removing empty section \note in file 'qc.have.params.Rd'
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qc.have.params text html latex example chm
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qc.ok text html latex example chm
Note: removing empty section \note in file 'qc.read.file.Rd'
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qc.read.file text html latex example chm
qc.stats text html latex example chm
Note: removing empty section \details in file 'read.affy.Rd'
Note: removing empty section \details in file 'read.affy.Rd'
read.affy text html latex example chm
Note: removing empty section \details in file 'read.affy.mixed.Rd'
Note: removing empty section \details in file 'read.affy.mixed.Rd'
read.affy.mixed text html latex example chm
Note: removing empty section \note in file 'setQCEnvironment.Rd'
Note: removing empty section \note in file 'setQCEnvironment.Rd'
setQCEnvironment text html latex example chm
Note: removing empty section \value in file 'simpleaffy-deprecated.Rd'
Note: removing empty section \note in file 'simpleaffy-deprecated.Rd'
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simpleaffy-deprecated text html latex example chm
standard.pearson text html latex example chm
trad.scatter.plot text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\BBS-2~1.4-B\meat\SIMPLE~1.RCH\00_PKG~1\SIMPLE~1\chm\simpleaffy.chm
Compile time: 0 minutes, 0 seconds
39 Topics
232 Local links
12 Internet links
1 Graphic
Created e:\biocbld\BBS-2~1.4-B\meat\SIMPLE~1.RCH\00_PKG~1\SIMPLE~1\chm\simpleaffy.chm, 64,611 bytes
Compression decreased file by 98,439 bytes.
** building package indices ...
** MD5 sums
* DONE (simpleaffy)