snpMatrix 1.8.0
David Clayton
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/snpMatrix | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'snpMatrix/DESCRIPTION' ... OK
* preparing 'snpMatrix':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'snpMatrix' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c adler32.c -o adler32.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c bind.c -o bind.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c compress.c -o compress.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c covwin.c -o covwin.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c crc32.c -o crc32.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c deflate.c -o deflate.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c force_hom.c -o force_hom.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c glm_test.c -o glm_test.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c glm_test_R.c -o glm_test_R.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c gzio.c -o gzio.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c hash_index.c -o hash_index.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c hphase.c -o hphase.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c ibs.c -o ibs.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c imputation.c -o imputation.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c in.c -o in.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c infback.c -o infback.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c inffast.c -o inffast.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c inflate.c -o inflate.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c inftrees.c -o inftrees.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c input.c -o input.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c invert.c -o invert.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c ld_graphic_eps.c -o ld_graphic_eps.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c ld_with.c -o ld_with.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c mla.c -o mla.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c outdata.c -o outdata.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c pairwise_linkage.c -o pairwise_linkage.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c read_chiamo.c -o read_chiamo.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c read_hapmap.c -o read_hapmap.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c read_pedfile.c -o read_pedfile.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c read_signals.c -o read_signals.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c readbed.c -o readbed.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c readped.c -o readped.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c sdfpw.c -o sdfpw.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c single_snp_tests.c -o single_snp_tests.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c snp_summary.c -o snp_summary.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c snpmpy.c -o snpmpy.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c solve_cubic.c -o solve_cubic.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c solve_quadratic.c -o solve_quadratic.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c structure.c -o structure.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c switch.c -o switch.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c tdt.c -o tdt.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c trees.c -o trees.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c uncompr.c -o uncompr.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c zutil.c -o zutil.o
gcc -shared -s -o snpMatrix.dll tmp.def adler32.o bind.o compress.o covwin.o crc32.o deflate.o force_hom.o glm_test.o glm_test_R.o gzio.o hash_index.o hphase.o ibs.o imputation.o in.o infback.o inffast.o inflate.o inftrees.o input.o invert.o ld_graphic_eps.o ld_with.o mla.o outdata.o pairwise_linkage.o read_chiamo.o read_hapmap.o read_pedfile.o read_signals.o readbed.o readped.o sdfpw.o single_snp_tests.o snp_summary.o snpmpy.o solve_cubic.o solve_quadratic.o structure.o switch.o tdt.o trees.o uncompr.o zutil.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** data
** inst
** preparing package for lazy loading
Loading required package: splines
Creating a new generic function for "plot" in "snpMatrix"
** help
*** installing help indices
>>> Building/Updating help pages for package 'snpMatrix'
Formats: text html latex example chm
X.snp-class text html latex example chm
X.snp.matrix-class text html latex example chm
chi.squared text html latex example chm
epsout.ld.snp text html latex example chm
families text html latex example chm
filter.rules text html latex example chm
for.exercise text html latex example chm
glm.test.control text html latex chm
ibs.stats text html latex example chm
ibsCount text html latex example chm
ibsDist text html latex example chm
imputation.maf text html latex example chm
impute.snps text html latex example chm
ld.snp text html latex example chm
ld.with text html latex example chm
misinherits text html latex example chm
pair.result.ld.snp text html latex example chm
plot.snp.dprime text html latex example chm
pool text html latex example chm
pool2 text html latex chm
qq.chisq text html latex example chm
read.HapMap.data text html latex example chm
read.pedfile.info text html latex chm
read.pedfile.map text html latex chm
read.plink text html latex chm
read.snps.chiamo text html latex example chm
read.snps.long text html latex chm
read.snps.pedfile text html latex chm
read.wtccc.signals text html latex example chm
row.summary text html latex example chm
single.snp.tests text html latex example chm
snp-class text html latex example chm
snp.cbind text html latex example chm
snp.cor text html latex example chm
snp.dprime-class text html latex example chm
snp.imputation text html latex example chm
snp.lhs.tests text html latex example chm
snp.matrix-class text html latex example chm
snp.pre text html latex example chm
snp.reg.imputation-class text html latex example chm
snp.rhs.tests text html latex example chm
snp.tests.glm-class text html latex example chm
snp.tests.single-class text html latex example chm
snpMatrix-internal text html latex chm
snpMatrix-package text html latex chm
switch.alleles text html latex example chm
tdt.snp text html latex example chm
test.allele.switch text html latex example chm
testdata text html latex example chm
write.snp.matrix text html latex chm
wtccc.sample.list text html latex chm
xxt text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.4-bioc\meat\snpMatrix\chm\snpMatrix.chm
Compile time: 0 minutes, 2 seconds
53 Topics
397 Local links
26 Internet links
1 Graphic
Created e:\biocbld\bbs-2.4-bioc\meat\snpMatrix\chm\snpMatrix.chm, 119,336 bytes
Compression decreased file by 145,798 bytes.
** building package indices ...
** MD5 sums
* DONE (snpMatrix)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'snpMatrix_1.8.0.tar.gz'