Package: xps

Version: 1.4.10

Command: /Users/biocbuild/BBS/utils/build-universal.sh xps_1.4.10.tar.gz /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R xps.buildbin-libdir

StartedAt: 2009-10-20 19:36:37 -0700 (Tue, 20 Oct 2009)

EndedAt: 2009-10-20 19:45:10 -0700 (Tue, 20 Oct 2009)

EllapsedTime: 513.1 seconds

RetCode: 0

Status: OK

PackageFile: xps_1.4.10.tgz

PackageFileSize: 7.372 MiB

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=xps.buildbin-libdir xps_1.4.10.tar.gz'

* Installing *source* package ‘xps’ ...
checking for gcc... gcc-4.2 -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch i386 -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch i386 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc-4.2 -arch i386 -std=gnu99 -E
checking for gcc... (cached) gcc-4.2 -arch i386 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc-4.2 -arch i386 -std=gnu99 accepts -g... (cached) yes
checking for gcc-4.2 -arch i386 -std=gnu99 option to accept ANSI C... (cached) none needed
checking for root-config... yes
found ROOT version 5.22/00 in directory /usr/local
** libs
** arch - i386
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c TMLMath.cxx
TMLMath.cxx:1109:1: warning: "xmax" redefined
TMLMath.cxx:1060:1: warning: this is the location of the previous definition
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c TStat.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c StatUtils.cxx
StatUtils.cxx:240: warning: unused parameter ‘df’
StatUtils.cxx:264: warning: unused parameter ‘df’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSBase.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSUtils.cxx
XPSUtils.cxx:1323: warning: unused parameter ‘canvasname’
XPSUtils.cxx:1323: warning: unused parameter ‘treename’
XPSUtils.cxx:1323: warning: unused parameter ‘varexp’
XPSUtils.cxx:1323: warning: unused parameter ‘selection’
XPSUtils.cxx:1323: warning: unused parameter ‘opt’
XPSUtils.cxx:1712: warning: unused parameter ‘min’
XPSUtils.cxx:1712: warning: unused parameter ‘max’
XPSUtils.cxx:2107: warning: unused parameter ‘n’
XPSUtils.cxx:2107: warning: unused parameter ‘x’
XPSUtils.cxx:2107: warning: unused parameter ‘y’
XPSUtils.cxx:2107: warning: unused parameter ‘z’
XPSUtils.cxx:2107: warning: unused parameter ‘opt’
XPSUtils.cxx:2615: warning: unused parameter ‘index’
XPSUtils.cxx:3068: warning: unused parameter ‘n’
XPSUtils.cxx:3068: warning: unused parameter ‘colors’
XPSUtils.cxx:3068: warning: unused parameter ‘priority’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSSchemes.cxx
XPSSchemes.cxx:9992: warning: unused parameter ‘index’
XPSSchemes.cxx:10003: warning: unused parameter ‘index’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSDataTypes.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSProjectHandler.cxx
In file included from XPSProjectHandler.cxx:47:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSData.cxx
In file included from XPSData.h:47,
                 from XPSData.cxx:77:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSData.cxx:77:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSData.cxx:494: warning: unused parameter ‘name’
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1742: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXDAData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1936: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXMLHeader(std::ifstream&, const char*, char)’:
XPSData.cxx:2468: warning: unused variable ‘fNMasked’
XPSData.cxx:2478: warning: unused variable ‘fNOutlier’
XPSData.cxx:2488: warning: unused variable ‘fNModified’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSProcessing.cxx:744: warning: unused parameter ‘name’
XPSProcessing.cxx:1233: warning: unused parameter ‘unit’
XPSProcessing.cxx:1233: warning: unused parameter ‘type’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSHybridizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:53:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:53:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSHybridizer.cxx:1529: warning: unused parameter ‘num’
XPSHybridizer.cxx:1642: warning: unused parameter ‘num’
XPSHybridizer.cxx:1825: warning: unused parameter ‘value1’
XPSHybridizer.cxx:1825: warning: unused parameter ‘value2’
XPSHybridizer.cxx:1825: warning: unused parameter ‘num’
XPSHybridizer.cxx:1949: warning: unused parameter ‘num’
XPSHybridizer.cxx:2209: warning: unused parameter ‘msk’
XPSHybridizer.cxx:2253: warning: unused parameter ‘x’
XPSHybridizer.cxx:2253: warning: unused parameter ‘scale’
XPSHybridizer.cxx:2441: warning: unused parameter ‘x’
XPSHybridizer.cxx:2441: warning: unused parameter ‘scale’
XPSHybridizer.cxx:3493: warning: unused parameter ‘msk’
XPSHybridizer.cxx:3594: warning: unused parameter ‘msk’
XPSHybridizer.cxx:4169: warning: unused parameter ‘msk’
XPSHybridizer.cxx: In member function ‘Double_t XDetectionCall::WilcoxTest(Int_t, Double_t*, Double_t)’:
XPSHybridizer.cxx:1723: warning: ‘pval’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSSelector.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:51:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:51:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSSelector.cxx:315: warning: unused parameter ‘max’
XPSSelector.cxx:315: warning: unused parameter ‘showGraph’
XPSSelector.cxx: In member function ‘Double_t XRankSelector::Cutoff(Int_t, const Double_t*, Double_t, Bool_t)’:
XPSSelector.cxx:333: warning: ‘par0’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSNormalizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSNormalizer.cxx:516: warning: unused parameter ‘xout’
XPSNormalizer.cxx:593: warning: unused parameter ‘xout’
XPSNormalizer.cxx:672: warning: unused parameter ‘xout’
XPSNormalizer.cxx:1088: warning: unused parameter ‘n’
XPSNormalizer.cxx:1088: warning: unused parameter ‘x’
XPSNormalizer.cxx:1088: warning: unused parameter ‘msk’
XPSNormalizer.cxx: In member function ‘virtual Int_t XNormalizer::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’:
XPSNormalizer.cxx:239: warning: ‘his2sel’ may be used uninitialized in this function
XPSNormalizer.cxx:238: warning: ‘his2all’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSPreProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:85:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:85:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSPreProcessing.cxx:85:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipCall(Int_t, TTree**, Int_t&, TTree**, TFile*)’:
XPSPreProcessing.cxx:2679: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:3548: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:4822: warning: unused parameter ‘bgrd’
XPSPreProcessing.cxx:4822: warning: unused parameter ‘bgdev’
XPSPreProcessing.cxx:4859: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:4879: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:5201: warning: unused parameter ‘nrow’
XPSPreProcessing.cxx: In member function ‘virtual TTree* XExonProcesSet::SchemeTree(XAlgorithm*, void*, TLeaf**)’:
XPSPreProcessing.cxx:5838: warning: unused variable ‘scheme_ptr_ptr’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSNormation.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSNormation.cxx:70:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSNormation.cxx:182: warning: unused parameter ‘infile’
XPSNormation.cxx:988: warning: unused parameter ‘method’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSFilter.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:42:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSFilter.cxx:42:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.cxx:619: warning: unused parameter ‘sepo’
XPSFilter.cxx:1347: warning: unused parameter ‘table’
XPSFilter.cxx:1626: warning: unused parameter ‘infile’
XPSFilter.cxx:1626: warning: unused parameter ‘outfile’
XPSFilter.cxx:1626: warning: unused parameter ‘varlist’
XPSFilter.cxx:1626: warning: unused parameter ‘nrows’
XPSFilter.cxx:1626: warning: unused parameter ‘sepi’
XPSFilter.cxx:1626: warning: unused parameter ‘sepo’
XPSFilter.cxx:1626: warning: unused parameter ‘delim’
XPSFilter.cxx: In member function ‘virtual Int_t XUniFilter::Calculate(TTree*, const char*, TTree*, const char*, Int_t)’:
XPSFilter.cxx:1800: warning: unused variable ‘id’
XPSFilter.cxx: At global scope:
XPSFilter.cxx:1653: warning: unused parameter ‘leafname’
XPSFilter.cxx:1834: warning: unused parameter ‘outtree’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSAnalyzer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSAnalyzer.cxx:213: warning: unused parameter ‘type’
XPSAnalyzer.cxx:213: warning: unused parameter ‘options’
XPSAnalyzer.cxx:213: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:213: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:227: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:227: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:227: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:227: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:239: warning: unused parameter ‘n’
XPSAnalyzer.cxx:239: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:239: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:239: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:239: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:239: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:288: warning: unused parameter ‘type’
XPSAnalyzer.cxx:288: warning: unused parameter ‘options’
XPSAnalyzer.cxx:288: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:288: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:302: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:302: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:302: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:302: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:314: warning: unused parameter ‘n’
XPSAnalyzer.cxx:314: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:314: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:314: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:314: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:314: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:363: warning: unused parameter ‘type’
XPSAnalyzer.cxx:363: warning: unused parameter ‘options’
XPSAnalyzer.cxx:363: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:363: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:377: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:377: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:377: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:377: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:389: warning: unused parameter ‘n’
XPSAnalyzer.cxx:389: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:389: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:389: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:389: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:389: warning: unused parameter ‘mu’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSAnalysis.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSAnalysis.cxx:64:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSAnalysis.cxx:266: warning: unused parameter ‘infile’
XPSAnalysis.cxx:444: warning: unused parameter ‘type’
XPSAnalysis.cxx:964: warning: unused parameter ‘ntree’
XPSAnalysis.cxx:964: warning: unused parameter ‘tree’
XPSAnalysis.cxx:964: warning: unused parameter ‘n’
XPSAnalysis.cxx:964: warning: unused parameter ‘msk’
XPSAnalysis.cxx:1703: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1703: warning: unused parameter ‘n’
XPSAnalysis.cxx:1703: warning: unused parameter ‘names’
XPSAnalysis.cxx:1703: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1703: warning: unused parameter ‘output’
XPSAnalysis.cxx:1703: warning: unused parameter ‘sep’
XPSAnalysis.cxx:1995: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1995: warning: unused parameter ‘n’
XPSAnalysis.cxx:1995: warning: unused parameter ‘names’
XPSAnalysis.cxx:1995: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1995: warning: unused parameter ‘output’
XPSAnalysis.cxx:1995: warning: unused parameter ‘sep’
XPSAnalysis.cxx: In member function ‘virtual Int_t XUnivarSet::ExportUnivarTrees(Int_t, TString*, const char*, std::ofstream&, const char*)’:
XPSAnalysis.cxx:2189: warning: unused variable ‘option’
XPSAnalysis.cxx: At global scope:
XPSAnalysis.cxx:2698: warning: unused parameter ‘n’
XPSAnalysis.cxx:2698: warning: unused parameter ‘tree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2835: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2863: warning: unused parameter ‘n’
XPSAnalysis.cxx:2863: warning: unused parameter ‘names’
XPSAnalysis.cxx:2863: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘output’
XPSAnalysis.cxx:2863: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2911: warning: unused parameter ‘n’
XPSAnalysis.cxx:2911: warning: unused parameter ‘names’
XPSAnalysis.cxx:2911: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2911: warning: unused parameter ‘output’
XPSAnalysis.cxx:2911: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2980: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2980: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2980: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3008: warning: unused parameter ‘n’
XPSAnalysis.cxx:3008: warning: unused parameter ‘names’
XPSAnalysis.cxx:3008: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘output’
XPSAnalysis.cxx:3008: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3050: warning: unused parameter ‘n’
XPSAnalysis.cxx:3050: warning: unused parameter ‘names’
XPSAnalysis.cxx:3050: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3050: warning: unused parameter ‘output’
XPSAnalysis.cxx:3050: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3119: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:3119: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:3119: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3147: warning: unused parameter ‘n’
XPSAnalysis.cxx:3147: warning: unused parameter ‘names’
XPSAnalysis.cxx:3147: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘output’
XPSAnalysis.cxx:3147: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3189: warning: unused parameter ‘n’
XPSAnalysis.cxx:3189: warning: unused parameter ‘names’
XPSAnalysis.cxx:3189: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3189: warning: unused parameter ‘output’
XPSAnalysis.cxx:3189: warning: unused parameter ‘sep’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c rwrapper.cxx
In file included from XPSData.h:47,
                 from rwrapper.cxx:29:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from rwrapper.cxx:29:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from rwrapper.cxx:30:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from rwrapper.cxx:31:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
rwrapper.cxx:1387: warning: unused parameter ‘level’
Generating dictionary xpsDict.cxx...
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c xpsDict.cxx
In file included from xpsDict.h:40,
                 from xpsDict.cxx:16:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from xpsDict.h:41,
                 from xpsDict.cxx:16:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from xpsDict.h:46,
                 from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:47,
                 from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:48,
                 from xpsDict.cxx:16:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
MACOSX_DEPLOYMENT_TARGET=10.5 c++ -dynamiclib -single_module -undefined dynamic_lookup TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/lib/root -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lfreetype -lGui -pthread -lm -ldl  -lRIO -lGed -lTreePlayer -lTreeViewer -o  xps.dylib 
ln -sf xps.dylib xps.so
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'xps'
     Formats: text html latex example 
  AnalysisTreeSet-class             text    html    latex   example
  CallTreeSet-class                 text    html    latex   example
  DataTreeSet-class                 text    html    latex   example
  ExprTreeSet-class                 text    html    latex   example
  Filter-class                      text    html    latex   example
  FilterTreeSet-class               text    html    latex   example
  PreFilter-class                   text    html    latex   example
  PreFilter-constructor             text    html    latex   example
  ProcesSet-class                   text    html    latex   example
  ProjectInfo-class                 text    html    latex   example
  ProjectInfo-constructor           text    html    latex   example
  ROOT                              text    html    latex
  SchemeTreeSet-class               text    html    latex   example
  TreeSet-class                     text    html    latex   example
  UniFilter-class                   text    html    latex   example
  UniFilter-constructor             text    html    latex   example
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  boxplot-methods                   text    html    latex   example
  boxplot.dev                       text    html    latex
  callFilter-methods                text    html    latex   example
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  dfw                               text    html    latex   example
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  existsROOTFile                    text    html    latex   example
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  farms                             text    html    latex   example
  fcFilter-methods                  text    html    latex   example
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  getChipName                       text    html    latex   example
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  getDatatype                       text    html    latex   example
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  uniTest-methods                   text    html    latex   example
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  varFilter-methods                 text    html    latex   example
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  xps-package                       text    html    latex
  xpsOptions                        text    html    latex
** building package indices ...
* DONE (xps)

                INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=xps.buildbin-libdir --libs-only xps_1.4.10.tar.gz'

* Installing *source* package ‘xps’ ...
checking for gcc... gcc-4.2 -arch ppc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch ppc -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch ppc -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc-4.2 -arch ppc -std=gnu99 -E
checking for gcc... (cached) gcc-4.2 -arch ppc -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc-4.2 -arch ppc -std=gnu99 accepts -g... (cached) yes
checking for gcc-4.2 -arch ppc -std=gnu99 option to accept ANSI C... (cached) none needed
checking for root-config... yes
found ROOT version 5.22/00 in directory /usr/local
** libs
** arch - ppc
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c TMLMath.cxx
TMLMath.cxx:1109:1: warning: "xmax" redefined
TMLMath.cxx:1060:1: warning: this is the location of the previous definition
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c TStat.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c StatUtils.cxx
StatUtils.cxx:240: warning: unused parameter ‘df’
StatUtils.cxx:264: warning: unused parameter ‘df’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSBase.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSUtils.cxx
XPSUtils.cxx:1323: warning: unused parameter ‘canvasname’
XPSUtils.cxx:1323: warning: unused parameter ‘treename’
XPSUtils.cxx:1323: warning: unused parameter ‘varexp’
XPSUtils.cxx:1323: warning: unused parameter ‘selection’
XPSUtils.cxx:1323: warning: unused parameter ‘opt’
XPSUtils.cxx:1712: warning: unused parameter ‘min’
XPSUtils.cxx:1712: warning: unused parameter ‘max’
XPSUtils.cxx:2107: warning: unused parameter ‘n’
XPSUtils.cxx:2107: warning: unused parameter ‘x’
XPSUtils.cxx:2107: warning: unused parameter ‘y’
XPSUtils.cxx:2107: warning: unused parameter ‘z’
XPSUtils.cxx:2107: warning: unused parameter ‘opt’
XPSUtils.cxx:2615: warning: unused parameter ‘index’
XPSUtils.cxx:3068: warning: unused parameter ‘n’
XPSUtils.cxx:3068: warning: unused parameter ‘colors’
XPSUtils.cxx:3068: warning: unused parameter ‘priority’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSSchemes.cxx
XPSSchemes.cxx:9992: warning: unused parameter ‘index’
XPSSchemes.cxx:10003: warning: unused parameter ‘index’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSDataTypes.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSProjectHandler.cxx
In file included from XPSProjectHandler.cxx:47:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSData.cxx
In file included from XPSData.h:47,
                 from XPSData.cxx:77:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSData.cxx:77:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSData.cxx:494: warning: unused parameter ‘name’
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1742: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXDAData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1936: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXMLHeader(std::ifstream&, const char*, char)’:
XPSData.cxx:2468: warning: unused variable ‘fNMasked’
XPSData.cxx:2478: warning: unused variable ‘fNOutlier’
XPSData.cxx:2488: warning: unused variable ‘fNModified’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSProcessing.cxx:744: warning: unused parameter ‘name’
XPSProcessing.cxx:1233: warning: unused parameter ‘unit’
XPSProcessing.cxx:1233: warning: unused parameter ‘type’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSHybridizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:53:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:53:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSHybridizer.cxx:1529: warning: unused parameter ‘num’
XPSHybridizer.cxx:1642: warning: unused parameter ‘num’
XPSHybridizer.cxx:1825: warning: unused parameter ‘value1’
XPSHybridizer.cxx:1825: warning: unused parameter ‘value2’
XPSHybridizer.cxx:1825: warning: unused parameter ‘num’
XPSHybridizer.cxx:1949: warning: unused parameter ‘num’
XPSHybridizer.cxx:2209: warning: unused parameter ‘msk’
XPSHybridizer.cxx:2253: warning: unused parameter ‘x’
XPSHybridizer.cxx:2253: warning: unused parameter ‘scale’
XPSHybridizer.cxx:2441: warning: unused parameter ‘x’
XPSHybridizer.cxx:2441: warning: unused parameter ‘scale’
XPSHybridizer.cxx:3493: warning: unused parameter ‘msk’
XPSHybridizer.cxx:3594: warning: unused parameter ‘msk’
XPSHybridizer.cxx:4169: warning: unused parameter ‘msk’
XPSHybridizer.cxx: In member function ‘Double_t XDetectionCall::WilcoxTest(Int_t, Double_t*, Double_t)’:
XPSHybridizer.cxx:1723: warning: ‘pval’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSSelector.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:51:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:51:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSSelector.cxx:315: warning: unused parameter ‘max’
XPSSelector.cxx:315: warning: unused parameter ‘showGraph’
XPSSelector.cxx: In member function ‘Double_t XRankSelector::Cutoff(Int_t, const Double_t*, Double_t, Bool_t)’:
XPSSelector.cxx:333: warning: ‘par0’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSNormalizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSNormalizer.cxx:516: warning: unused parameter ‘xout’
XPSNormalizer.cxx:593: warning: unused parameter ‘xout’
XPSNormalizer.cxx:672: warning: unused parameter ‘xout’
XPSNormalizer.cxx:1088: warning: unused parameter ‘n’
XPSNormalizer.cxx:1088: warning: unused parameter ‘x’
XPSNormalizer.cxx:1088: warning: unused parameter ‘msk’
XPSNormalizer.cxx: In member function ‘virtual Int_t XNormalizer::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’:
XPSNormalizer.cxx:239: warning: ‘his2sel’ may be used uninitialized in this function
XPSNormalizer.cxx:238: warning: ‘his2all’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSPreProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:85:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:85:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSPreProcessing.cxx:85:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipCall(Int_t, TTree**, Int_t&, TTree**, TFile*)’:
XPSPreProcessing.cxx:2679: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:3548: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:4822: warning: unused parameter ‘bgrd’
XPSPreProcessing.cxx:4822: warning: unused parameter ‘bgdev’
XPSPreProcessing.cxx:4859: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:4879: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:5201: warning: unused parameter ‘nrow’
XPSPreProcessing.cxx: In member function ‘virtual TTree* XExonProcesSet::SchemeTree(XAlgorithm*, void*, TLeaf**)’:
XPSPreProcessing.cxx:5838: warning: unused variable ‘scheme_ptr_ptr’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSNormation.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSNormation.cxx:70:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSNormation.cxx:182: warning: unused parameter ‘infile’
XPSNormation.cxx:988: warning: unused parameter ‘method’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSFilter.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:42:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSFilter.cxx:42:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.cxx:619: warning: unused parameter ‘sepo’
XPSFilter.cxx:1347: warning: unused parameter ‘table’
XPSFilter.cxx:1626: warning: unused parameter ‘infile’
XPSFilter.cxx:1626: warning: unused parameter ‘outfile’
XPSFilter.cxx:1626: warning: unused parameter ‘varlist’
XPSFilter.cxx:1626: warning: unused parameter ‘nrows’
XPSFilter.cxx:1626: warning: unused parameter ‘sepi’
XPSFilter.cxx:1626: warning: unused parameter ‘sepo’
XPSFilter.cxx:1626: warning: unused parameter ‘delim’
XPSFilter.cxx: In member function ‘virtual Int_t XUniFilter::Calculate(TTree*, const char*, TTree*, const char*, Int_t)’:
XPSFilter.cxx:1800: warning: unused variable ‘id’
XPSFilter.cxx: At global scope:
XPSFilter.cxx:1653: warning: unused parameter ‘leafname’
XPSFilter.cxx:1834: warning: unused parameter ‘outtree’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSAnalyzer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSAnalyzer.cxx:213: warning: unused parameter ‘type’
XPSAnalyzer.cxx:213: warning: unused parameter ‘options’
XPSAnalyzer.cxx:213: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:213: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:227: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:227: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:227: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:227: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:239: warning: unused parameter ‘n’
XPSAnalyzer.cxx:239: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:239: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:239: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:239: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:239: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:288: warning: unused parameter ‘type’
XPSAnalyzer.cxx:288: warning: unused parameter ‘options’
XPSAnalyzer.cxx:288: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:288: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:302: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:302: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:302: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:302: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:314: warning: unused parameter ‘n’
XPSAnalyzer.cxx:314: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:314: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:314: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:314: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:314: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:363: warning: unused parameter ‘type’
XPSAnalyzer.cxx:363: warning: unused parameter ‘options’
XPSAnalyzer.cxx:363: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:363: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:377: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:377: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:377: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:377: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:389: warning: unused parameter ‘n’
XPSAnalyzer.cxx:389: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:389: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:389: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:389: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:389: warning: unused parameter ‘mu’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSAnalysis.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSAnalysis.cxx:64:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSAnalysis.cxx:266: warning: unused parameter ‘infile’
XPSAnalysis.cxx:444: warning: unused parameter ‘type’
XPSAnalysis.cxx:964: warning: unused parameter ‘ntree’
XPSAnalysis.cxx:964: warning: unused parameter ‘tree’
XPSAnalysis.cxx:964: warning: unused parameter ‘n’
XPSAnalysis.cxx:964: warning: unused parameter ‘msk’
XPSAnalysis.cxx:1703: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1703: warning: unused parameter ‘n’
XPSAnalysis.cxx:1703: warning: unused parameter ‘names’
XPSAnalysis.cxx:1703: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1703: warning: unused parameter ‘output’
XPSAnalysis.cxx:1703: warning: unused parameter ‘sep’
XPSAnalysis.cxx:1995: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1995: warning: unused parameter ‘n’
XPSAnalysis.cxx:1995: warning: unused parameter ‘names’
XPSAnalysis.cxx:1995: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1995: warning: unused parameter ‘output’
XPSAnalysis.cxx:1995: warning: unused parameter ‘sep’
XPSAnalysis.cxx: In member function ‘virtual Int_t XUnivarSet::ExportUnivarTrees(Int_t, TString*, const char*, std::ofstream&, const char*)’:
XPSAnalysis.cxx:2189: warning: unused variable ‘option’
XPSAnalysis.cxx: At global scope:
XPSAnalysis.cxx:2698: warning: unused parameter ‘n’
XPSAnalysis.cxx:2698: warning: unused parameter ‘tree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2835: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2863: warning: unused parameter ‘n’
XPSAnalysis.cxx:2863: warning: unused parameter ‘names’
XPSAnalysis.cxx:2863: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘output’
XPSAnalysis.cxx:2863: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2911: warning: unused parameter ‘n’
XPSAnalysis.cxx:2911: warning: unused parameter ‘names’
XPSAnalysis.cxx:2911: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2911: warning: unused parameter ‘output’
XPSAnalysis.cxx:2911: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2980: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2980: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2980: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3008: warning: unused parameter ‘n’
XPSAnalysis.cxx:3008: warning: unused parameter ‘names’
XPSAnalysis.cxx:3008: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘output’
XPSAnalysis.cxx:3008: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3050: warning: unused parameter ‘n’
XPSAnalysis.cxx:3050: warning: unused parameter ‘names’
XPSAnalysis.cxx:3050: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3050: warning: unused parameter ‘output’
XPSAnalysis.cxx:3050: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3119: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:3119: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:3119: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3147: warning: unused parameter ‘n’
XPSAnalysis.cxx:3147: warning: unused parameter ‘names’
XPSAnalysis.cxx:3147: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘output’
XPSAnalysis.cxx:3147: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3189: warning: unused parameter ‘n’
XPSAnalysis.cxx:3189: warning: unused parameter ‘names’
XPSAnalysis.cxx:3189: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3189: warning: unused parameter ‘output’
XPSAnalysis.cxx:3189: warning: unused parameter ‘sep’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c rwrapper.cxx
In file included from XPSData.h:47,
                 from rwrapper.cxx:29:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from rwrapper.cxx:29:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from rwrapper.cxx:30:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from rwrapper.cxx:31:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
rwrapper.cxx:1387: warning: unused parameter ‘level’
Generating dictionary xpsDict.cxx...
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c xpsDict.cxx
In file included from xpsDict.h:40,
                 from xpsDict.cxx:16:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from xpsDict.h:41,
                 from xpsDict.cxx:16:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from xpsDict.h:46,
                 from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:47,
                 from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:48,
                 from xpsDict.cxx:16:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
MACOSX_DEPLOYMENT_TARGET=10.5 c++ -dynamiclib -single_module -undefined dynamic_lookup TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/lib/root -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lfreetype -lGui -pthread -lm -ldl  -lRIO -lGed -lTreePlayer -lTreeViewer -o  xps.dylib 
ln -sf xps.dylib xps.so
* DONE (xps)

                INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --library=xps.buildbin-libdir --libs-only xps_1.4.10.tar.gz'

* Installing *source* package ‘xps’ ...
checking for gcc... gcc-4.2 -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc-4.2 -arch x86_64 -std=gnu99 -E
checking for gcc... (cached) gcc-4.2 -arch x86_64 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... (cached) yes
checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ANSI C... (cached) none needed
checking for root-config... yes
found ROOT version 5.22/00 in directory /usr/local
** libs
** arch - x86_64
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c TMLMath.cxx
TMLMath.cxx:1109:1: warning: "xmax" redefined
TMLMath.cxx:1060:1: warning: this is the location of the previous definition
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c TStat.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c StatUtils.cxx
StatUtils.cxx:240: warning: unused parameter ‘df’
StatUtils.cxx:264: warning: unused parameter ‘df’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSBase.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSUtils.cxx
XPSUtils.cxx:1323: warning: unused parameter ‘canvasname’
XPSUtils.cxx:1323: warning: unused parameter ‘treename’
XPSUtils.cxx:1323: warning: unused parameter ‘varexp’
XPSUtils.cxx:1323: warning: unused parameter ‘selection’
XPSUtils.cxx:1323: warning: unused parameter ‘opt’
XPSUtils.cxx:1712: warning: unused parameter ‘min’
XPSUtils.cxx:1712: warning: unused parameter ‘max’
XPSUtils.cxx:2107: warning: unused parameter ‘n’
XPSUtils.cxx:2107: warning: unused parameter ‘x’
XPSUtils.cxx:2107: warning: unused parameter ‘y’
XPSUtils.cxx:2107: warning: unused parameter ‘z’
XPSUtils.cxx:2107: warning: unused parameter ‘opt’
XPSUtils.cxx:2615: warning: unused parameter ‘index’
XPSUtils.cxx:3068: warning: unused parameter ‘n’
XPSUtils.cxx:3068: warning: unused parameter ‘colors’
XPSUtils.cxx:3068: warning: unused parameter ‘priority’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSSchemes.cxx
XPSSchemes.cxx:9992: warning: unused parameter ‘index’
XPSSchemes.cxx:10003: warning: unused parameter ‘index’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSDataTypes.cxx
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSProjectHandler.cxx
In file included from XPSProjectHandler.cxx:47:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSData.cxx
In file included from XPSData.h:47,
                 from XPSData.cxx:77:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSData.cxx:77:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSData.cxx:494: warning: unused parameter ‘name’
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1742: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXDAData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1936: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXMLHeader(std::ifstream&, const char*, char)’:
XPSData.cxx:2468: warning: unused variable ‘fNMasked’
XPSData.cxx:2478: warning: unused variable ‘fNOutlier’
XPSData.cxx:2488: warning: unused variable ‘fNModified’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSProcessing.cxx:744: warning: unused parameter ‘name’
XPSProcessing.cxx:1233: warning: unused parameter ‘unit’
XPSProcessing.cxx:1233: warning: unused parameter ‘type’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSHybridizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:53:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:53:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSHybridizer.cxx:1529: warning: unused parameter ‘num’
XPSHybridizer.cxx:1642: warning: unused parameter ‘num’
XPSHybridizer.cxx:1825: warning: unused parameter ‘value1’
XPSHybridizer.cxx:1825: warning: unused parameter ‘value2’
XPSHybridizer.cxx:1825: warning: unused parameter ‘num’
XPSHybridizer.cxx:1949: warning: unused parameter ‘num’
XPSHybridizer.cxx:2209: warning: unused parameter ‘msk’
XPSHybridizer.cxx:2253: warning: unused parameter ‘x’
XPSHybridizer.cxx:2253: warning: unused parameter ‘scale’
XPSHybridizer.cxx:2441: warning: unused parameter ‘x’
XPSHybridizer.cxx:2441: warning: unused parameter ‘scale’
XPSHybridizer.cxx:3493: warning: unused parameter ‘msk’
XPSHybridizer.cxx:3594: warning: unused parameter ‘msk’
XPSHybridizer.cxx:4169: warning: unused parameter ‘msk’
XPSHybridizer.cxx: In member function ‘Double_t XDetectionCall::WilcoxTest(Int_t, Double_t*, Double_t)’:
XPSHybridizer.cxx:1723: warning: ‘pval’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSSelector.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:51:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:51:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSSelector.cxx:315: warning: unused parameter ‘max’
XPSSelector.cxx:315: warning: unused parameter ‘showGraph’
XPSSelector.cxx: In member function ‘Double_t XRankSelector::Cutoff(Int_t, const Double_t*, Double_t, Bool_t)’:
XPSSelector.cxx:333: warning: ‘par0’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSNormalizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSNormalizer.cxx:516: warning: unused parameter ‘xout’
XPSNormalizer.cxx:593: warning: unused parameter ‘xout’
XPSNormalizer.cxx:672: warning: unused parameter ‘xout’
XPSNormalizer.cxx:1088: warning: unused parameter ‘n’
XPSNormalizer.cxx:1088: warning: unused parameter ‘x’
XPSNormalizer.cxx:1088: warning: unused parameter ‘msk’
XPSNormalizer.cxx: In member function ‘virtual Int_t XNormalizer::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’:
XPSNormalizer.cxx:239: warning: ‘his2sel’ may be used uninitialized in this function
XPSNormalizer.cxx:238: warning: ‘his2all’ may be used uninitialized in this function
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSPreProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:85:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:85:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSPreProcessing.cxx:85:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipCall(Int_t, TTree**, Int_t&, TTree**, TFile*)’:
XPSPreProcessing.cxx:2679: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:3548: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:4822: warning: unused parameter ‘bgrd’
XPSPreProcessing.cxx:4822: warning: unused parameter ‘bgdev’
XPSPreProcessing.cxx:4859: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:4879: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:5201: warning: unused parameter ‘nrow’
XPSPreProcessing.cxx: In member function ‘virtual TTree* XExonProcesSet::SchemeTree(XAlgorithm*, void*, TLeaf**)’:
XPSPreProcessing.cxx:5838: warning: unused variable ‘scheme_ptr_ptr’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSNormation.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSNormation.cxx:70:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
XPSNormation.cxx:182: warning: unused parameter ‘infile’
XPSNormation.cxx:988: warning: unused parameter ‘method’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSFilter.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:42:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSFilter.cxx:42:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.cxx:619: warning: unused parameter ‘sepo’
XPSFilter.cxx:1347: warning: unused parameter ‘table’
XPSFilter.cxx:1626: warning: unused parameter ‘infile’
XPSFilter.cxx:1626: warning: unused parameter ‘outfile’
XPSFilter.cxx:1626: warning: unused parameter ‘varlist’
XPSFilter.cxx:1626: warning: unused parameter ‘nrows’
XPSFilter.cxx:1626: warning: unused parameter ‘sepi’
XPSFilter.cxx:1626: warning: unused parameter ‘sepo’
XPSFilter.cxx:1626: warning: unused parameter ‘delim’
XPSFilter.cxx: In member function ‘virtual Int_t XUniFilter::Calculate(TTree*, const char*, TTree*, const char*, Int_t)’:
XPSFilter.cxx:1800: warning: unused variable ‘id’
XPSFilter.cxx: At global scope:
XPSFilter.cxx:1653: warning: unused parameter ‘leafname’
XPSFilter.cxx:1834: warning: unused parameter ‘outtree’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSAnalyzer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
XPSAnalyzer.cxx:213: warning: unused parameter ‘type’
XPSAnalyzer.cxx:213: warning: unused parameter ‘options’
XPSAnalyzer.cxx:213: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:213: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:227: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:227: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:227: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:227: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:239: warning: unused parameter ‘n’
XPSAnalyzer.cxx:239: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:239: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:239: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:239: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:239: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:288: warning: unused parameter ‘type’
XPSAnalyzer.cxx:288: warning: unused parameter ‘options’
XPSAnalyzer.cxx:288: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:288: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:302: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:302: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:302: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:302: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:314: warning: unused parameter ‘n’
XPSAnalyzer.cxx:314: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:314: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:314: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:314: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:314: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:363: warning: unused parameter ‘type’
XPSAnalyzer.cxx:363: warning: unused parameter ‘options’
XPSAnalyzer.cxx:363: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:363: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:377: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:377: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:377: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:377: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:389: warning: unused parameter ‘n’
XPSAnalyzer.cxx:389: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:389: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:389: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:389: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:389: warning: unused parameter ‘mu’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c XPSAnalysis.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from XPSAnalysis.cxx:64:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSAnalysis.cxx:266: warning: unused parameter ‘infile’
XPSAnalysis.cxx:444: warning: unused parameter ‘type’
XPSAnalysis.cxx:964: warning: unused parameter ‘ntree’
XPSAnalysis.cxx:964: warning: unused parameter ‘tree’
XPSAnalysis.cxx:964: warning: unused parameter ‘n’
XPSAnalysis.cxx:964: warning: unused parameter ‘msk’
XPSAnalysis.cxx:1703: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1703: warning: unused parameter ‘n’
XPSAnalysis.cxx:1703: warning: unused parameter ‘names’
XPSAnalysis.cxx:1703: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1703: warning: unused parameter ‘output’
XPSAnalysis.cxx:1703: warning: unused parameter ‘sep’
XPSAnalysis.cxx:1995: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1995: warning: unused parameter ‘n’
XPSAnalysis.cxx:1995: warning: unused parameter ‘names’
XPSAnalysis.cxx:1995: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1995: warning: unused parameter ‘output’
XPSAnalysis.cxx:1995: warning: unused parameter ‘sep’
XPSAnalysis.cxx: In member function ‘virtual Int_t XUnivarSet::ExportUnivarTrees(Int_t, TString*, const char*, std::ofstream&, const char*)’:
XPSAnalysis.cxx:2189: warning: unused variable ‘option’
XPSAnalysis.cxx: At global scope:
XPSAnalysis.cxx:2698: warning: unused parameter ‘n’
XPSAnalysis.cxx:2698: warning: unused parameter ‘tree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2835: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2835: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2863: warning: unused parameter ‘n’
XPSAnalysis.cxx:2863: warning: unused parameter ‘names’
XPSAnalysis.cxx:2863: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2863: warning: unused parameter ‘output’
XPSAnalysis.cxx:2863: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2911: warning: unused parameter ‘n’
XPSAnalysis.cxx:2911: warning: unused parameter ‘names’
XPSAnalysis.cxx:2911: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2911: warning: unused parameter ‘output’
XPSAnalysis.cxx:2911: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2980: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2980: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2980: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3008: warning: unused parameter ‘n’
XPSAnalysis.cxx:3008: warning: unused parameter ‘names’
XPSAnalysis.cxx:3008: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3008: warning: unused parameter ‘output’
XPSAnalysis.cxx:3008: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3050: warning: unused parameter ‘n’
XPSAnalysis.cxx:3050: warning: unused parameter ‘names’
XPSAnalysis.cxx:3050: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3050: warning: unused parameter ‘output’
XPSAnalysis.cxx:3050: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3119: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:3119: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:3119: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3147: warning: unused parameter ‘n’
XPSAnalysis.cxx:3147: warning: unused parameter ‘names’
XPSAnalysis.cxx:3147: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3147: warning: unused parameter ‘output’
XPSAnalysis.cxx:3147: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3189: warning: unused parameter ‘n’
XPSAnalysis.cxx:3189: warning: unused parameter ‘names’
XPSAnalysis.cxx:3189: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3189: warning: unused parameter ‘output’
XPSAnalysis.cxx:3189: warning: unused parameter ‘sep’
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c rwrapper.cxx
In file included from XPSData.h:47,
                 from rwrapper.cxx:29:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from rwrapper.cxx:29:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from rwrapper.cxx:30:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from rwrapper.cxx:31:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
rwrapper.cxx:1387: warning: unused parameter ‘level’
Generating dictionary xpsDict.cxx...
c++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -I/usr/local/include/root -c xpsDict.cxx
In file included from xpsDict.h:40,
                 from xpsDict.cxx:16:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from xpsDict.h:41,
                 from xpsDict.cxx:16:
XPSData.h:677: warning: unused parameter ‘min’
XPSData.h:677: warning: unused parameter ‘max’
XPSData.h:677: warning: unused parameter ‘var2sort’
XPSData.h:677: warning: unused parameter ‘down’
In file included from xpsDict.h:46,
                 from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSPreProcessing.h:371: warning:   by ‘virtual const char* XExonProcesSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:47,
                 from xpsDict.cxx:16:
XPSProcessing.h:282: warning: ‘virtual const char* XProcesSet::GetTranscriptID(XTransAnnotation*)’ was hidden
XPSNormation.h:215: warning:   by ‘virtual const char* XNormedExonSet::GetTranscriptID(XUnit*, XTransAnnotation*, Int_t)’
In file included from xpsDict.h:48,
                 from xpsDict.cxx:16:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:427: warning:   by ‘XAlgorithm::Calculate’
MACOSX_DEPLOYMENT_TARGET=10.5 c++ -dynamiclib -single_module -undefined dynamic_lookup TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/lib/root -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lfreetype -lGui -pthread -lm -ldl  -lRIO -lGed -lTreePlayer -lTreeViewer -o  xps.dylib 
ln -sf xps.dylib xps.so
* DONE (xps)