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Package 20/389HostnameOS / ArchBUILDCHECKBUILD BIN
Agi4x44PreProcess 1.8.0
Pedro Lopez-Romero
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/Agi4x44PreProcess
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: Agi4x44PreProcess
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings Agi4x44PreProcess_1.8.0.tar.gz
StartedAt: 2010-10-04 15:44:32 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 15:45:59 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 86.9 seconds
RetCode: 0
Status:  OK 
CheckDir: Agi4x44PreProcess.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/Agi4x44PreProcess.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'Agi4x44PreProcess/DESCRIPTION' ... OK
* this is package 'Agi4x44PreProcess' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Agi4x44PreProcess' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

Agi4x44PreProcess.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘Agi4x44PreProcess’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Agi4x44PreProcess)

Agi4x44PreProcess.Rcheck/Agi4x44PreProcess-Ex.timings:

nameusersystemelapsed
Agi4x44PreProcess-package0.0010.0000.002
BGandNorm000
BoxPlot0.0000.0010.001
CV.rep.probes0.0000.0000.001
HeatMap000
MVAplotMED0.0000.0010.000
MVAplotMEDctrl2.7980.0612.876
PCAplot000
RLE0.0000.0000.001
boxplotNegCtrl000
build.eset0.0000.0000.001
build.mappings000
dd000
ensembl.htmlpage0.0000.0000.001
filter.NonUnifOL0.0010.0000.000
filter.PopnOL0.0010.0000.001
filter.control0.0010.0000.000
filter.isfound000
filter.probes0.0000.0000.001
filter.saturated000
filter.wellaboveBG000
filter.wellaboveNEG0.0000.0010.000
genes.rpt.agi4.5650.3505.070
gsea.files0.0000.0010.001
hierclus0.0000.0000.001
plotDensity0.0010.0000.001
read.AgilentFE0.3020.0090.313
read.targets0.0020.0010.003
summarize.probe0.0000.0010.001
targets0.0010.0000.001
write.eset0.0010.0000.001