* checking for file 'BGmix/DESCRIPTION' ... OK
* preparing 'BGmix':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'BGmix' ...
Untarring Boost header files...
** libs
making DLL ...
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -I ../boostIncl -DUSING_R -O2 -Wall -c BGmix_main.cpp -o BGmix_main.o
BGmix_main.cpp: In function 'void BGmix(int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, int&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double*, double*, double*, int*, int&, double*, int*, char**, char**, char**, char**, char**)':
BGmix_main.cpp:165: warning: suggest parentheses around comparison in operand of '&'
BGmix_main.cpp:178: warning: suggest parentheses around comparison in operand of '&'
BGmix_main.cpp:179: warning: suggest parentheses around comparison in operand of '&'
BGmix_main.cpp:546: warning: suggest parentheses around comparison in operand of '|'
BGmix_main.cpp:621: warning: suggest parentheses around comparison in operand of '|'
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -I ../boostIncl -DUSING_R -O2 -Wall -c rundir.cpp -o rundir.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -I ../boostIncl -DUSING_R -O2 -Wall -c updates_BGmix.cpp -o updates_BGmix.o
updates_BGmix.cpp: In function 'void update_z_beta1_joint2(int*, double**, int*, int&, int&, double*, double&, double&, double**, double**, double**, int*, double**, double**, int&, int&, int&, int*, int&, int&, int&, Random&)':
updates_BGmix.cpp:192: warning: suggest parentheses around comparison in operand of '|'
updates_BGmix.cpp:200: warning: suggest parentheses around comparison in operand of '|'
updates_BGmix.cpp: In function 'void predict(double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, double**, double*, double**, double**, double**, double**, double*, double*, int*, double**, double**, int*, double*, double&, double&, double&, double&, double&, int&, int&, int&, int&, int&, int*, int&, Random&)':
updates_BGmix.cpp:870: warning: suggest parentheses around comparison in operand of '|'
updates_BGmix.cpp:883: warning: suggest parentheses around comparison in operand of '|'
updates_BGmix.cpp:883: warning: suggest parentheses around comparison in operand of '|'
updates_BGmix.cpp:893: warning: suggest parentheses around comparison in operand of '|'
updates_BGmix.cpp: In function 'void predict_t(double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, double*, double*, int*, double**, double**, int*, double*, double&, double&, double&, double&, double&, int&, int&, int&, int&, int&, int*, int&, Random&)':
updates_BGmix.cpp:992: warning: suggest parentheses around comparison in operand of '|'
updates_BGmix.cpp:1005: warning: suggest parentheses around comparison in operand of '|'
updates_BGmix.cpp:1005: warning: suggest parentheses around comparison in operand of '|'
updates_BGmix.cpp:1015: warning: suggest parentheses around comparison in operand of '|'
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o BGmix.dll tmp.def BGmix_main.o rundir.o updates_BGmix.o -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/tmpdir/Rinst421639129/BGmix/libs/x64
... done
** R
** data
** inst
** preparing package for lazy loading
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (BGmix)
* creating vignettes ... ERROR
Loading required package: KernSmooth
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
[1] "These plots are designed for differential expression model."
[1] "These plots are designed for differential expression model."
[1] "No. DE genes for FDR<=5% is 148"
[1] "No. DE genes for FDR<=10% is 163"
[1] "No. DE genes for FDR<=5% is 148"
[1] "No. DE genes for FDR<=10% is 163"
Error: processing vignette 'BGmix.Rnw' failed with diagnostics:
chunk 6
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, :
scan() expected 'a real', got '-1.#IND'
Execution halted