Package: CNVtools

Version: 1.42.0

Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings CNVtools_1.42.0.tar.gz

StartedAt: 2010-10-04 17:39:07 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 17:42:34 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 206.4 seconds

RetCode: 0

Status:  OK

CheckDir: CNVtools.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/CNVtools.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CNVtools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CNVtools' version '1.42.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CNVtools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'CNVtools' ...
** libs
  making DLL ...
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -c fitmodel.cpp -o fitmodel.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -c glm_test.cpp -o glm_test.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -c mla.cpp -o mla.o
g++ -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -c routine.cpp -o routine.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c zeroin.c -o zeroin.o
g++ -shared -s -static-libgcc -o CNVtools.dll tmp.def fitmodel.o glm_test.o mla.o routine.o zeroin.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/CNVtools.Rcheck/CNVtools/libs
  ... done
** R
** data
** inst
** preparing package for lazy loading
Loading required package: splines
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (CNVtools)

name	user	system	elapsed
CNVtest.binary	18.59	0.01	18.64
CNVtest.qt	14.58	0.02	14.59
CNVtest.select.model	98.16	0.01	98.17
cnv.plot	18.33	0.02	18.38
qt.plot	14.67	0.00	14.67