Package: CORREP

Version: 1.14.0

Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings CORREP_1.14.0.tar.gz

StartedAt: 2010-10-04 16:26:28 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 16:27:19 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 51.2 seconds

RetCode: 0

Status:  OK

CheckDir: CORREP.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/CORREP.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CORREP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CORREP' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CORREP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: CORREP-package.Rd:37-38: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'CORREP' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: class
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (CORREP)

name	user	system	elapsed
cor.LRtest	0.1	0.0	0.1
cor.LRtest.std	0.06	0.00	0.07
cor.balance	0.19	0.00	0.18
cor.bootci	2.31	0.00	2.32
cor.unbalance	0	0	0
gal_all	0.02	0.00	0.01
permutest	25.19	0.00	25.20
true.member	0.00	0.01	0.02