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Package 103/389HostnameOS / ArchBUILDCHECKBUILD BIN
DNAcopy 1.22.1
Venkatraman E. Seshan
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/DNAcopy
Last Changed Rev: 46873 / Revision: 49923
Last Changed Date: 2010-05-14 13:34:58 -0700 (Fri, 14 May 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386 [ OK ] OK  OK 

Summary

Package: DNAcopy
Version: 1.22.1
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD build DNAcopy
StartedAt: 2010-10-04 13:43:15 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 13:43:30 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 15.3 seconds
RetCode: 0
Status:  OK 
PackageFile: DNAcopy_1.22.1.tar.gz
PackageFileSize: 252 KiB

Command output

* checking for file 'DNAcopy/DESCRIPTION' ... OK
* preparing 'DNAcopy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package ‘DNAcopy’ ...
** libs
*** arch - i386
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f: In function ‘wtmaxo’:
cbsWtstats.f:17: warning: ‘tmaxj’ may be used uninitialized in this function
cbsWtstats.f:17: warning: ‘tmaxi’ may be used uninitialized in this function
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic -c cbststats.f -o cbststats.o
cbststats.f: In function ‘tmaxo’:
cbststats.f:11: warning: ‘sxmxi’ may be used uninitialized in this function
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic -c changepoints.f -o changepoints.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic -c esegment.f -o esegment.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c flchoose.c -o flchoose.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c fphyper.c -o fphyper.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c fpnorm.c -o fpnorm.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic -c getbdry.f -o getbdry.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic -c prune.f -o prune.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c rshared.c -o rshared.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic -c segmentp.f -o segmentp.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic -c smoothCNA.f -o smoothCNA.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic -c tailprobs.f -o tailprobs.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/tmp/Rinst2694566038/DNAcopy/libs/i386
*** arch - ppc
gfortran -arch ppc   -fPIC  -g -O2 -Wall -pedantic -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f: In function ‘wtmaxo’:
cbsWtstats.f:17: warning: ‘tmaxj’ may be used uninitialized in this function
cbsWtstats.f:17: warning: ‘tmaxi’ may be used uninitialized in this function
gfortran -arch ppc   -fPIC  -g -O2 -Wall -pedantic -c cbststats.f -o cbststats.o
cbststats.f: In function ‘tmaxo’:
cbststats.f:11: warning: ‘sxmxi’ may be used uninitialized in this function
gfortran -arch ppc   -fPIC  -g -O2 -Wall -pedantic -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -pedantic -c changepoints.f -o changepoints.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -pedantic -c esegment.f -o esegment.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c flchoose.c -o flchoose.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c fphyper.c -o fphyper.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c fpnorm.c -o fpnorm.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -pedantic -c getbdry.f -o getbdry.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -pedantic -c prune.f -o prune.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c rshared.c -o rshared.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -pedantic -c segmentp.f -o segmentp.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -pedantic -c smoothCNA.f -o smoothCNA.o
gfortran -arch ppc   -fPIC  -g -O2 -Wall -pedantic -c tailprobs.f -o tailprobs.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/tmp/Rinst2694566038/DNAcopy/libs/ppc
*** arch - x86_64
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f: In function ‘wtmaxo’:
cbsWtstats.f:17: warning: ‘tmaxj’ may be used uninitialized in this function
cbsWtstats.f:17: warning: ‘tmaxi’ may be used uninitialized in this function
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic -c cbststats.f -o cbststats.o
cbststats.f: In function ‘tmaxo’:
cbststats.f:11: warning: ‘sxmxi’ may be used uninitialized in this function
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic -c changepoints.f -o changepoints.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic -c esegment.f -o esegment.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c flchoose.c -o flchoose.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c fphyper.c -o fphyper.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c fpnorm.c -o fpnorm.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic -c getbdry.f -o getbdry.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic -c prune.f -o prune.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c rshared.c -o rshared.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic -c segmentp.f -o segmentp.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic -c smoothCNA.f -o smoothCNA.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic -c tailprobs.f -o tailprobs.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/tmp/Rinst2694566038/DNAcopy/libs/x86_64
** R
** data
**  moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (DNAcopy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'DNAcopy_1.22.1.tar.gz'