GLAD 2.10.0
Philippe Hupe
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/GLAD | | Last Changed Rev: 47149 / Revision: 49923 | | Last Changed Date: 2010-05-26 11:24:55 -0700 (Wed, 26 May 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | [ OK ] | OK | OK |
* checking for file 'GLAD/DESCRIPTION' ... OK
* preparing 'GLAD':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
* installing the package to re-build vignettes
* installing *source* package ‘GLAD’ ...
checking for pkg-config... /usr/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
GSL has been found on the operating system
operating system: Darwin
configure: creating ./config.status
config.status: creating src/Makevars
src/Makevars file
PKG_LIBS = -L/usr/local/lib -lgsl -lgslcblas -lm
PKG_CPPFLAGS += -DIS_MAC_OS
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c BkpInfo.cpp -o BkpInfo.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c HaarSeg.cpp -o HaarSeg.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c MoveBkp.cpp -o MoveBkp.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c OutliersGNL.cpp -o OutliersGNL.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c chrBreakpoints.cpp -o chrBreakpoints.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c cutree.cpp -o cutree.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c daglad.cpp -o daglad.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c distance.cpp -o distance.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c filterBkp.cpp -o filterBkp.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c findCluster.cpp -o findCluster.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c glad-utils.cpp -o glad-utils.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c hclust.cpp -o hclust.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c laws.c -o laws.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -DIS_MAC_OS -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c loopRemove.cpp -o loopRemove.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GLAD.so BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/tmp/Rinst3052951424/GLAD/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (GLAD)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* running cleanup
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GLAD_2.10.0.tar.gz'