GenomicRanges 1.0.9
Biocore Team c/o BioC user list
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/GenomicRanges | | Last Changed Rev: 49071 / Revision: 49923 | | Last Changed Date: 2010-08-27 19:20:48 -0700 (Fri, 27 Aug 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/GenomicRanges.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GenomicRanges/DESCRIPTION' ... OK
* this is package 'GenomicRanges' version '1.0.9'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomicRanges' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking tests ...
Running 'GenomicRanges_unit_tests.R'
OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package 'GenomicRanges' ...
** libs
making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -I"E:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -I"E:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -I"E:/biocbld/bbs-2.6-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_narrow':
cigar_utils.c:500: warning: 'OPL' may be used uninitialized in this function
cigar_utils.c:500: note: 'OPL' was declared here
cigar_utils.c:501: warning: 'OP' may be used uninitialized in this function
cigar_utils.c:501: note: 'OP' was declared here
cigar_utils.c: In function 'cigar_qnarrow':
cigar_utils.c:340: warning: 'OPL' may be used uninitialized in this function
cigar_utils.c:340: note: 'OPL' was declared here
cigar_utils.c:341: warning: 'OP' may be used uninitialized in this function
cigar_utils.c:341: note: 'OP' was declared here
cigar_utils.c: In function 'cigar_to_width':
cigar_utils.c:897: warning: 'width' may be used uninitialized in this function
cigar_utils.c: In function 'cigar_to_qwidth2':
cigar_utils.c:861: warning: 'qwidth' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/GenomicRanges.Rcheck/GenomicRanges/libs
... done
** R
** inst
** preparing package for lazy loading
Attaching package: 'IRanges'
The following object(s) are masked from 'package:base':
Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
rbind, rep.int, table
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (GenomicRanges)