Package: Harshlight

Version: 1.18.0

Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD INSTALL --build --library=Harshlight.buildbin-libdir Harshlight_1.18.0.tar.gz

StartedAt: 2010-10-04 19:29:13 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 19:29:21 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 8.2 seconds

RetCode: 0

Status:  OK

PackageFile: Harshlight_1.18.0.zip

PackageFileSize: 379.6 KiB

* installing *source* package 'Harshlight' ...

  Using auto-selected zip option '--use-zip-data'

** libs
  making DLL ...
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -std=gnu99 -c Harshlight.c -o Harshlight.o
Harshlight.c: In function 'norm':
Harshlight.c:1316: warning: unused variable 'sorted2'
Harshlight.c: In function 'report_overall_header':
Harshlight.c:1467: warning: unknown conversion type character ')' in format
Harshlight.c:1471: warning: unknown conversion type character ')' in format
Harshlight.c:1474: warning: unknown conversion type character ')' in format
Harshlight.c: In function 'chip_summary':
Harshlight.c:1532: warning: unknown conversion type character ')' in format
Harshlight.c:1542: warning: unknown conversion type character ')' in format
Harshlight.c:1543: warning: unknown conversion type character ')' in format
Harshlight.c: In function 'extended_stop':
Harshlight.c:1555: warning: unknown conversion type character ')' in format
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o Harshlight.dll tmp.def Harshlight.o -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/meat/Harshlight.buildbin-libdir/Harshlight/libs/x64
  ... done
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: matchprobes
Loading required package: AnnotationDbi
Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
    rbind, rep.int, table


*** Deprecation warning ***
The matchprobes package is deprecated and will not be supported
anymore starting with Bioconductor 2.4. Please switch to using the
Biostrings package for efficient string manipulations. If you need
to build a probe package, please see the makeProbePackage vignette
in the AnnotationDbi package.

Loading required package: makecdfenv
Loading required package: hypergraph
Loading required package: graph

Attaching package: 'graph'

The following object(s) are masked from 'package:Biostrings':

    complement


Attaching package: 'hypergraph'

The following object(s) are masked from 'package:IRanges':

    head, tail

The following object(s) are masked from 'package:AnnotationDbi':

    head, tail

The following object(s) are masked from 'package:utils':

    head, tail

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Harshlight' as Harshlight_1.18.0.zip

* DONE (Harshlight)