PICS 1.0.6
Arnaud Droit , Xuekui Zhang , Raphael Gottardo
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/PICS | | Last Changed Rev: 47924 / Revision: 49923 | | Last Changed Date: 2010-07-06 08:38:46 -0700 (Tue, 06 Jul 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | WARNINGS | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* checking for file 'PICS/DESCRIPTION' ... OK
* preparing 'PICS':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'PICS' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include -O3 -Wall -std=gnu99 -c background.c -o background.o
background.c: In function 'background':
background.c:44: warning: statement with no effect
background.c:97: warning: statement with no effect
background.c:12: warning: unused variable 'length'
background.c:10: warning: unused variable 'countR'
background.c:118:2: warning: no newline at end of file
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include -O3 -Wall -std=gnu99 -c pics.c -o pics.o
pics.c: In function 'iterEM':
pics.c:581: warning: unused variable 'mu'
pics.c: In function 'ECM1':
pics.c:804: warning: suggest parentheses around comparison in operand of &
pics.c:964: warning: suggest parentheses around comparison in operand of &
pics.c:652: warning: unused variable 'k'
pics.c: In function 'ECM2':
pics.c:1010: warning: unused variable 'ee'
pics.c:1010: warning: unused variable 'ggR'
pics.c:1010: warning: unused variable 'ggF'
pics.c:1010: warning: unused variable 'aaR'
pics.c:1010: warning: unused variable 'aaF'
pics.c:1010: warning: unused variable 'etaDiff'
pics.c:1001: warning: unused variable 'k'
pics.c: In function 'BIC':
pics.c:1273: warning: unused variable 'k'
pics.c: In function 'getInfMat':
pics.c:1634: warning: unused variable 'PhiRw'
pics.c:1634: warning: unused variable 'PhiFw'
pics.c: In function 'mergePeak':
pics.c:1890: warning: unused variable 'j'
pics.c:1890: warning: unused variable 'i'
pics.c: In function 'BIC':
pics.c:1276: warning: 'penalty' may be used uninitialized in this function
pics.c: In function 'fitModelK':
pics.c:421: warning: 'firstFit' may be used uninitialized in this function
pics.c:421: warning: 'ans' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -IE:/biocbld/bbs-2.6-bioc/R/src/include -IC:/gsl/include -O3 -Wall -std=gnu99 -c segment.c -o segment.o
segment.c: In function 'segReads':
segment.c:106: warning: suggest parentheses around comparison in operand of &
segment.c:97: warning: unused variable 'count'
segment.c: In function 'callRegions':
segment.c:248: warning: unused variable 'i'
segment.c: In function 'getSegL':
segment.c:1284: warning: unused variable 'j'
segment.c: In function 'getDensity':
segment.c:1461: warning: suggest parentheses around comparison in operand of &
segment.c:1462: warning: suggest parentheses around comparison in operand of &
segment.c:1463: warning: suggest parentheses around comparison in operand of &
segment.c:1464: warning: suggest parentheses around comparison in operand of &
segment.c:1465: warning: suggest parentheses around comparison in operand of &
segment.c:1466: warning: suggest parentheses around comparison in operand of &
segment.c:1467: warning: suggest parentheses around comparison in operand of &
segment.c:1409: warning: unused variable 'filter1'
segment.c:1408: warning: unused variable 'muFilter'
segment.c:1539:7: warning: no newline at end of file
gcc -shared -s -static-libgcc -o PICS.dll tmp.def background.o pics.o segment.o -lws2_32 -LC:/gsl/bin -lgsl -lgslcblas -lm -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/tmpdir/Rinst794885061/PICS/libs
... done
** R
** inst
** preparing package for lazy loading
Attaching package: 'IRanges'
The following object(s) are masked from 'package:base':
Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
rbind, rep.int, table
Loading required package: Biostrings
Loading required package: ShortRead
Loading required package: lattice
Loading required package: Rsamtools
Creating a new generic function for "density" in "PICS"
Creating a new generic function for "plot" in "PICS"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (PICS)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'PICS_1.0.6.tar.gz'