* installing *source* package 'RBGL' ...
found boostIncl header sources and tar archive;\n using what is there.
** libs
making DLL ...
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c bbc.cpp -o bbc.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from bbc.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from boostIncl/boost/graph/dijkstra_shortest_paths.hpp:15,
from boostIncl/boost/graph/betweenness_centrality.hpp:14,
from bbc.cpp:2:
boostIncl/boost/utility/compare_pointees.hpp: In function 'void boost::breadth_first_visit(const IncidenceGraph&, typename boost::graph_traits<Graph>::vertex_descriptor, Buffer&, BFSVisitor, ColorMap) [with IncidenceGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, Buffer = boost::dijkstra_shortest_paths_no_init(const VertexListGraph&, typename boost::graph_traits<Graph>::vertex_descriptor, PredecessorMap, DistanceMap, WeightMap, IndexMap, Compare, Combine, DistZero, DijkstraVisitor, ColorMap) [with VertexListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, DijkstraVisitor = boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, long long unsigned int, long long unsigned int&> >, PredecessorMap = boost::dummy_property_map, DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, double, double&>, WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, IndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, Compare = std::less<double>, Combine = boost::closed_plus<double>, DistZero = double, ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type, std::allocator<boost::default_color_type> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, boost::default_color_type, boost::default_color_type&>]::MutableQueue, BFSVisitor = boost::detail::dijkstra_bfs_visitor<boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, long long unsigned int, long long unsigned int&> >, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, double, double&>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int> >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::dummy_property_map, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, double, double&>, boost::closed_plus<double>, std::less<double> >, ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type, std::allocator<boost::default_color_type> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, boost::default_color_type, boost::default_color_type&>]':
boostIncl/boost/utility/compare_pointees.hpp:32: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/utility/compare_pointees.hpp:32: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
In file included from bbc.cpp:2:
boostIncl/boost/optional/optional.hpp: In function 'void boost::detail::graph::brandes_betweenness_centrality_impl(const Graph&, CentralityMap, EdgeCentralityMap, IncomingMap, DistanceMap, DependencyMap, PathCountMap, VertexIndexMap, ShortestPaths) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, CentralityMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_centrality_t>, EdgeCentralityMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_centrality_t>, IncomingMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >&>, DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, double, double&>, DependencyMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, double, double&>, PathCountMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, long long unsigned int, long long unsigned int&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, long long unsigned int>, ShortestPaths = boost::detail::graph::brandes_dijkstra_shortest_paths<boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t> >]':
boostIncl/boost/optional/optional.hpp:315: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c cliques.cpp -o cliques.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from cliques.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c clusteringCoef.cpp -o clusteringCoef.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from clusteringCoef.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
clusteringCoef.cpp: In function 'SEXPREC* graphGenerator(SEXPREC*, SEXPREC*, SEXPREC*)':
clusteringCoef.cpp:394: warning: 'u' may be used uninitialized in this function
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c dominatorTree.cpp -o dominatorTree.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from dominatorTree.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from edmonds_optimum_branching.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c hcs.cpp -o hcs.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from hcs.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c incrConnComp.cpp -o incrConnComp.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from incrConnComp.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c interfaces.cpp -o interfaces.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from interfaces.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c layout.cpp -o layout.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from layout.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
layout.cpp: In function 'SEXPREC* BGL_layout_internal(E_LAYOUT_METHOD, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
layout.cpp:116: warning: unused variable 'r'
layout.cpp:117: warning: unused variable 'w'
layout.cpp:118: warning: unused variable 'h'
In file included from layout.cpp:9:
fruchterman_reingold.hpp: In function 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, DisplacementMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs<double, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t> >, Cooling = boost::linear_cooling<double>, DisplacementMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double>*, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, long long unsigned int>, boost::simple_point<double>, boost::simple_point<double>&>]':
fruchterman_reingold.hpp:423: instantiated from 'static void boost::detail::fr_force_directed_layout<boost::detail::error_property_not_found>::run(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, boost::detail::error_property_not_found, const boost::bgl_named_params<Param, Tag, Rest>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs<double, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t> >, Cooling = boost::linear_cooling<double>, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]'
fruchterman_reingold.hpp:449: instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, const boost::bgl_named_params<P, T, R>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]'
fruchterman_reingold.hpp:470: instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim) [with Graph = IndexGraph, PositionMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>*, boost::simple_point<double>, boost::simple_point<double>&, vertex_position_t>, Dim = double]'
layout.cpp:112: instantiated from here
fruchterman_reingold.hpp:354: warning: suggest parentheses around assignment used as truth value
In file included from boostIncl/boost/graph/dijkstra_shortest_paths.hpp:15,
from boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:28,
from boostIncl/boost/graph/kamada_kawai_spring_layout.hpp:13,
from layout.cpp:3:
boostIncl/boost/utility/compare_pointees.hpp: In function 'void boost::breadth_first_visit(const IncidenceGraph&, typename boost::graph_traits<Graph>::vertex_descriptor, Buffer&, BFSVisitor, ColorMap) [with IncidenceGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, Buffer = boost::dijkstra_shortest_paths_no_init(const VertexListGraph&, typename boost::graph_traits<Graph>::vertex_descriptor, PredecessorMap, DistanceMap, WeightMap, IndexMap, Compare, Combine, DistZero, DijkstraVisitor, ColorMap) [with VertexListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, DijkstraVisitor = boost::dijkstra_visitor<boost::null_visitor>, PredecessorMap = boost::dummy_property_map, DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, IndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int>, Compare = std::less<double>, Combine = boost::closed_plus<double>, DistZero = double, ColorMap = boost::iterator_property_map<boost::default_color_type*, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int>, boost::default_color_type, boost::default_color_type&>]::MutableQueue, BFSVisitor = boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >, ColorMap = boost::iterator_property_map<boost::default_color_type*, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int>, boost::default_color_type, boost::default_color_type&>]':
boostIncl/boost/utility/compare_pointees.hpp:32: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/utility/compare_pointees.hpp:32: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
In file included from boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:27,
from boostIncl/boost/graph/kamada_kawai_spring_layout.hpp:13,
from layout.cpp:3:
boostIncl/boost/optional/optional.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, DistanceMatrix = __gnu_cxx::__normal_iterator<std::vector<double, std::allocator<double> >*, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > >, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, long long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]::Graph2, Size = long long unsigned int, WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>, PredecessorMap = boost::dummy_property_map, DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, BinaryFunction = boost::closed_plus<double>, BinaryPredicate = std::less<double>, BellmanFordVisitor = boost::bellman_visitor<boost::null_visitor>]':
boostIncl/boost/optional/optional.hpp:315: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:315: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c minST.cpp -o minST.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from minST.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from minST.cpp:2:
boostIncl/boost/optional/optional.hpp: In function 'void boost::detail::kruskal_mst_impl(const Graph&, OutputIterator, Rank, Parent, Weight) [with Graph = R_adjacency_list<boost::directedS, double>, OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int> > > >, Rank = boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long long unsigned int>, long long unsigned int, long long unsigned int&>, Parent = boost::iterator_property_map<__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long long unsigned int>, long long unsigned int, long long unsigned int&>, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, long long unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>]':
boostIncl/boost/optional/optional.hpp:315: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp: In function 'SEXPREC* BGL_PRIM_U(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
boostIncl/boost/optional/optional.hpp:315: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/utility/compare_pointees.hpp:32: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/utility/compare_pointees.hpp:32: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c mincut.cpp -o mincut.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from mincut.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c ordering.cpp -o ordering.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from ordering.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c planar.cpp -o planar.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from planar.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:151: warning: comparison between signed and unsigned integer expressions
planar.cpp:153: warning: comparison between signed and unsigned integer expressions
planar.cpp:161: warning: comparison between signed and unsigned integer expressions
planar.cpp:165: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:256: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:369: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:461: warning: unused variable 'i'
planar.cpp: In function 'SEXPREC* makeConnected(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:485: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* makeBiconnectedPlanar(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:539: warning: comparison between signed and unsigned integer expressions
In file included from planar.cpp:11:
boostIncl/boost/graph/max_cardinality_matching.hpp: In member function 'bool boost::edmonds_augmenting_path_finder<Graph, MateMap, VertexIndexMap>::augment_matching() [with Graph = R_adjacency_list<boost::undirectedS, int>, MateMap = long long unsigned int*, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long long unsigned int>]':
boostIncl/boost/graph/max_cardinality_matching.hpp:231: warning: 'v' may be used uninitialized in this function
boostIncl/boost/graph/max_cardinality_matching.hpp:231: warning: 'w' may be used uninitialized in this function
In file included from boostIncl/boost/graph/boyer_myrvold_planar_test.hpp:12,
from planar.cpp:3:
boostIncl/boost/graph/planar_detail/boyer_myrvold_impl.hpp: In member function 'void boost::boyer_myrvold_impl<Graph, VertexIndexMap, StoreOldHandlesPolicy, StoreEmbeddingPolicy>::extract_kuratowski_subgraph(OutputIterator, EdgeIndexMap) [with OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > > >, EdgeIndexMap = boost::adj_list_edge_property_map<boost::undirected_tag, int, int&, long long unsigned int, boost::property<boost::edge_index_t, int, boost::no_property>, boost::edge_index_t>, Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::no_property>, boost::property<boost::edge_index_t, int, boost::no_property>, boost::no_property, boost::listS>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long long unsigned int>, StoreOldHandlesPolicy = boost::graph::detail::store_old_handles, StoreEmbeddingPolicy = boost::graph::detail::no_embedding]':
boostIncl/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1279: warning: 'previous_vertex' may be used uninitialized in this function
boostIncl/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1238: warning: 'bicomp_root' may be used uninitialized in this function
boostIncl/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1237: warning: 'z' may be used uninitialized in this function
In file included from planar.cpp:5:
boostIncl/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::no_property>, boost::property<boost::edge_index_t, int, boost::no_property>, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >&>, OutputIterator = std::back_insert_iterator<std::vector<long long unsigned int, std::allocator<long long unsigned int> > >, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long long unsigned int>]':
boostIncl/boost/graph/planar_canonical_ordering.hpp:68: warning: 'second_vertex' may be used uninitialized in this function
In file included from planar.cpp:6:
boostIncl/boost/graph/chrobak_payne_drawing.hpp: In function 'void boost::chrobak_payne_straight_line_drawing(const Graph&, PlanarEmbedding, ForwardIterator, ForwardIterator, GridPositionMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::no_property>, boost::property<boost::edge_index_t, int, boost::no_property>, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long long unsigned int> > >&>, ForwardIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int, std::allocator<long long unsigned int> > >, GridPositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<coord_t*, std::vector<coord_t, std::allocator<coord_t> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long long unsigned int>, coord_t, coord_t&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long long unsigned int>]':
boostIncl/boost/graph/chrobak_payne_drawing.hpp:208: warning: 'next_to_rightmost' may be used uninitialized in this function
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c shortestPath.cpp -o shortestPath.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from shortestPath.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:27,
from shortestPath.cpp:4:
boostIncl/boost/optional/optional.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, Size = int, WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, PredecessorMap = long long unsigned int*, DistanceMap = double*, BinaryFunction = boost::closed_plus<double>, BinaryPredicate = std::less<double>, BellmanFordVisitor = boost::bellman_visitor<boost::null_visitor>]':
boostIncl/boost/optional/optional.hpp:315: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp: In function 'SEXPREC* BGL_bellman_ford_shortest_paths(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
In file included from boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:27,
from shortestPath.cpp:4:
boostIncl/boost/optional/optional.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]::Graph2, Size = long long unsigned int, WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>, PredecessorMap = boost::dummy_property_map, DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, BinaryFunction = boost::closed_plus<double>, BinaryPredicate = std::less<double>, BellmanFordVisitor = boost::bellman_visitor<boost::null_visitor>]':
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:315: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
In file included from boostIncl/boost/graph/dijkstra_shortest_paths.hpp:15,
from shortestPath.cpp:3:
boostIncl/boost/utility/compare_pointees.hpp: In function 'void boost::breadth_first_visit(const IncidenceGraph&, typename boost::graph_traits<Graph>::vertex_descriptor, Buffer&, BFSVisitor, ColorMap) [with IncidenceGraph = R_adjacency_list<boost::directedS, double>, Buffer = boost::dijkstra_shortest_paths_no_init(const VertexListGraph&, typename boost::graph_traits<Graph>::vertex_descriptor, PredecessorMap, DistanceMap, WeightMap, IndexMap, Compare, Combine, DistZero, DijkstraVisitor, ColorMap) [with VertexListGraph = R_adjacency_list<boost::directedS, double>, DijkstraVisitor = boost::dijkstra_visitor<boost::null_visitor>, PredecessorMap = long long unsigned int*, DistanceMap = double*, WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, long long unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, IndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long long unsigned int>, Compare = std::less<double>, Combine = boost::closed_plus<double>, DistZero = double, ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type, std::allocator<boost::default_color_type> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long long unsigned int>, boost::default_color_type, boost::default_color_type&>]::MutableQueue, BFSVisitor = boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<double*, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long long unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, long long unsigned int, const boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, long long unsigned int*, double*, boost::closed_plus<double>, std::less<double> >, ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type, std::allocator<boost::default_color_type> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long long unsigned int>, boost::default_color_type, boost::default_color_type&>]':
boostIncl/boost/utility/compare_pointees.hpp:32: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/utility/compare_pointees.hpp:32: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/utility/compare_pointees.hpp: In function 'void boost::breadth_first_visit(const IncidenceGraph&, typename boost::graph_traits<Graph>::vertex_descriptor, Buffer&, BFSVisitor, ColorMap) [with IncidenceGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, Buffer = boost::dijkstra_shortest_paths_no_init(const VertexListGraph&, typename boost::graph_traits<Graph>::vertex_descriptor, PredecessorMap, DistanceMap, WeightMap, IndexMap, Compare, Combine, DistZero, DijkstraVisitor, ColorMap) [with VertexListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, DijkstraVisitor = boost::dijkstra_visitor<boost::null_visitor>, PredecessorMap = boost::dummy_property_map, DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, IndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int>, Compare = std::less<double>, Combine = boost::closed_plus<double>, DistZero = double, ColorMap = boost::iterator_property_map<boost::default_color_type*, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int>, boost::default_color_type, boost::default_color_type&>]::MutableQueue, BFSVisitor = boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >, ColorMap = boost::iterator_property_map<boost::default_color_type*, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int>, boost::default_color_type, boost::default_color_type&>]':
boostIncl/boost/utility/compare_pointees.hpp:32: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/utility/compare_pointees.hpp:32: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp: In function 'SEXPREC* BGL_dijkstra_shortest_paths_D(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
boostIncl/boost/optional/optional.hpp:315: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c sna.cpp -o sna.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from sna.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from boostIncl/boost/graph/adjacency_list.hpp:313,
from RBGL.hpp:26,
from sna.cpp:1:
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'std::pair<typename Config::edge_descriptor, bool> boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, boost::vec_adj_list_impl<G, C, B>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> > >, boost::no_property, boost::listS>, Config = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> > >, boost::no_property, boost::listS>::config, Base = boost::directed_graph_helper<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> > >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> > >, boost::no_property, boost::listS>::config>]':
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long long unsigned int>::m_target' may be used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long long unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long long unsigned int>::m_source' may be used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long long unsigned int>::m_source' was declared here
In file included from boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:27,
from sna.cpp:3:
boostIncl/boost/optional/optional.hpp: In function 'bool boost::bellman_ford_shortest_paths(EdgeListGraph&, Size, WeightMap, PredecessorMap, DistanceMap, BinaryFunction, BinaryPredicate, BellmanFordVisitor) [with EdgeListGraph = boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]::Graph2, Size = long long unsigned int, WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight_t>, PredecessorMap = boost::dummy_property_map, DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, BinaryFunction = boost::closed_plus<double>, BinaryPredicate = std::less<double>, BellmanFordVisitor = boost::bellman_visitor<boost::null_visitor>]':
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:315: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:262: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:268: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
In file included from boostIncl/boost/graph/dijkstra_shortest_paths.hpp:15,
from boostIncl/boost/graph/johnson_all_pairs_shortest.hpp:28,
from sna.cpp:3:
boostIncl/boost/utility/compare_pointees.hpp: In function 'void boost::breadth_first_visit(const IncidenceGraph&, typename boost::graph_traits<Graph>::vertex_descriptor, Buffer&, BFSVisitor, ColorMap) [with IncidenceGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, Buffer = boost::dijkstra_shortest_paths_no_init(const VertexListGraph&, typename boost::graph_traits<Graph>::vertex_descriptor, PredecessorMap, DistanceMap, WeightMap, IndexMap, Compare, Combine, DistZero, DijkstraVisitor, ColorMap) [with VertexListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, DijkstraVisitor = boost::dijkstra_visitor<boost::null_visitor>, PredecessorMap = boost::dummy_property_map, DistanceMap = boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, WeightMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, IndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int>, Compare = std::less<double>, Combine = boost::closed_plus<double>, DistZero = double, ColorMap = boost::iterator_property_map<boost::default_color_type*, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int>, boost::default_color_type, boost::default_color_type&>]::MutableQueue, BFSVisitor = boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<long long unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >, ColorMap = boost::iterator_property_map<boost::default_color_type*, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, long long unsigned int>, boost::default_color_type, boost::default_color_type&>]':
boostIncl/boost/utility/compare_pointees.hpp:32: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
boostIncl/boost/utility/compare_pointees.hpp:32: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c transitive_closure.cpp -o transitive_closure.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from transitive_closure.cpp:16:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
boostIncl/boost/optional/optional.hpp: In function 'SEXPREC* BGL_transitive_closure_D(SEXPREC*, SEXPREC*, SEXPREC*)':
boostIncl/boost/optional/optional.hpp:315: warning: dereferencing pointer '<anonymous>' does break strict-aliasing rules
boostIncl/boost/optional/optional.hpp:422: note: initialized from here
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -IboostIncl -O2 -Wall -c wavefront.cpp -o wavefront.o
In file included from c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/hash_set:60,
from boostIncl/boost/graph/adjacency_list.hpp:25,
from RBGL.hpp:26,
from wavefront.cpp:1:
c:/rtools211/mingw64/lib/gcc/../../x86_64-w64-mingw32/include/c++/4.4.4/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o RBGL.dll tmp.def bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/meat/RBGL.buildbin-libdir/RBGL/libs/x64
... done
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RBGL' as RBGL_1.24.0.zip
* DONE (RBGL)