Back to the "Multiple platform build/check report"[A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 17/389HostnameOS / ArchBUILDCHECKBUILD BIN
affyPLM 1.24.1
Ben Bolstad
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/affyPLM
Last Changed Rev: 48479 / Revision: 49923
Last Changed Date: 2010-07-27 18:56:47 -0700 (Tue, 27 Jul 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: affyPLM
Version: 1.24.1
Command: chmod a+r affyPLM -R && E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD build affyPLM
StartedAt: 2010-10-04 13:38:58 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 13:42:15 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 197.5 seconds
RetCode: 0
Status:  OK  
PackageFile: affyPLM_1.24.1.tar.gz
PackageFileSize: 3.66 MiB

Command output

* checking for file 'affyPLM/DESCRIPTION' ... OK
* preparing 'affyPLM':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'affyPLM' ...
** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c LESN.c -o LESN.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c PLM_avg_log.c -o PLM_avg_log.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c PLM_biweight.c -o PLM_biweight.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c PLM_log_avg.c -o PLM_log_avg.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c PLM_medianPM.c -o PLM_medianPM.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c PLM_median_logPM.c -o PLM_median_logPM.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c PLM_medianpolish.c -o PLM_medianpolish.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c PLM_modelmatrix.c -o PLM_modelmatrix.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c SCAB.c -o SCAB.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c chipbackground.c -o chipbackground.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c common_types.c -o common_types.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c do_PLMrlm.c -o do_PLMrlm.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c do_PLMrma.c -o do_PLMrma.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c do_PLMthreestep.c -o do_PLMthreestep.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c idealmismatch.c -o idealmismatch.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c lm_threestep.c -o lm_threestep.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c matrix_functions.c -o matrix_functions.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c nthLargestPM.c -o nthLargestPM.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c preprocess.c -o preprocess.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c psi_fns.c -o psi_fns.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c qnorm_probeset.c -o qnorm_probeset.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c read_rmaexpress.c -o read_rmaexpress.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c rlm_PLM.c -o rlm_PLM.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c rlm_threestep.c -o rlm_threestep.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c rmaPLM_pseudo.c -o rmaPLM_pseudo.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c rma_PLM.c -o rma_PLM.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c rma_common.c -o rma_common.o
rma_common.c: In function 'median':
rma_common.c:60: warning: unused variable 'i'
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c scaling.c -o scaling.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c threestep.c -o threestep.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c threestep_PLM.c -o threestep_PLM.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c threestep_common.c -o threestep_common.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c threestep_summary.c -o threestep_summary.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c threestep_summary_methods.c -o threestep_summary_methods.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB  -I"E:/biocbld/bbs-2.6-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -c transfns.c -o transfns.o
gcc -shared -s -static-libgcc -o affyPLM.dll tmp.def LESN.o PLM_avg_log.o PLM_biweight.o PLM_log_avg.o PLM_medianPM.o PLM_median_logPM.o PLM_medianpolish.o PLM_modelmatrix.o SCAB.o chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o idealmismatch.o lm_threestep.o matrix_functions.o nthLargestPM.o preprocess.o psi_fns.o qnorm_probeset.o read_rmaexpress.o rlm_PLM.o rlm_threestep.o rmaPLM_pseudo.o rma_PLM.o rma_common.o scaling.o threestep.o threestep_PLM.o threestep_common.o threestep_summary.o threestep_summary_methods.o transfns.o -lgfortran -LE:/biocbld/bbs-2.6-bioc/R/bin -lRlapack -LE:/biocbld/bbs-2.6-bioc/R/bin -lRblas -lRzlib -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/tmpdir/Rinst432889324/affyPLM/libs
  ... done
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "affyPLM"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (affyPLM)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'affyPLM_1.24.1.tar.gz'