Package: altcdfenvs

Version: 2.10.0

Command: /Users/biocbuild/BBS/utils/build-universal.sh altcdfenvs_2.10.0.tar.gz /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R altcdfenvs.buildbin-libdir

StartedAt: 2010-10-04 19:12:01 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 19:12:11 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 10.0 seconds

RetCode: 0

Status:  OK

PackageFile: altcdfenvs_2.10.0.tgz

PackageFileSize: 379.9 KiB

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=altcdfenvs.buildbin-libdir altcdfenvs_2.10.0.tar.gz'

* installing *source* package ‘altcdfenvs’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
    rbind, rep.int, table


*** Deprecation warning ***
The matchprobes package is deprecated and will not be supported
anymore starting with Bioconductor 2.4. Please switch to using the
Biostrings package for efficient string manipulations. If you need
to build a probe package, please see the makeProbePackage vignette
in the AnnotationDbi package.

Loading required package: graph

Attaching package: 'graph'

The following object(s) are masked from 'package:Biostrings':

    complement


Attaching package: 'hypergraph'

The following object(s) are masked from 'package:IRanges':

    head, tail

The following object(s) are masked from 'package:AnnotationDbi':

    head, tail

The following object(s) are masked from 'package:utils':

    head, tail

NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object)
in method for ‘toHypergraph’ with signature ‘"CdfEnvAffy"’: no definition for class "CdfEnvAffy"
Creating a new generic function for "plot" in "altcdfenvs"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (altcdfenvs)