externalVector 1.14.0
Biocore Team c/o BioC user list
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/externalVector | | Last Changed Rev: 46401 / Revision: 49923 | | Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/externalVector.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'externalVector/DESCRIPTION' ... OK
* this is package 'externalVector' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'externalVector' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Arith,externalVectorWithStorage-missing: no visible binding for global
variable '.generic'
Complex,externalVectorWithStorage: no visible binding for global
variable 'x'
external.size,externalResource-gcAllocator: no visible binding for
global variable 'x'
Subset2,ANY-ANY-noneIndex: possible error in Subset(x, i, NULL): unused
argument(s) (NULL)
Subset2,ANY-noneIndex-ANY: possible error in Subset(x, NULL, j): unused
argument(s) (j)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package 'externalVector' ...
** libs
making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c allocator.c -o allocator.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c arraySummary.c -o arraySummary.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c coerce.c -o coerce.o
coerce.c: In function 'ComplexFromString':
coerce.c:213: warning: initialization from incompatible pointer type
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c groups.c -o groups.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c math.c -o math.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c slice.c -o slice.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c storage.c -o storage.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include" -O3 -Wall -std=gnu99 -c subscript.c -o subscript.o
gcc -shared -s -static-libgcc -o externalVector.dll tmp.def allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/externalVector.Rcheck/externalVector/libs
... done
** R
** preparing package for lazy loading
Creating a new generic function for "match" in "externalVector"
Creating a new generic function for "as.vector" in "externalVector"
Creating a new generic function for "as.single" in "externalVector"
Creating a new generic function for "as.list" in "externalVector"
Creating a new generic function for "as.matrix" in "externalVector"
Creating a new generic function for "as.data.frame" in "externalVector"
Restoring the implicit generic function for 'colSums' from package 'base'
into package 'externalVector'; the generic differs from the default conversion (Formal arguments differ: (x, na.rm, dims), (x, na.rm, dims, ...))
Creating a new generic function for "colSums" in "externalVector"
Restoring the implicit generic function for 'colMeans' from package 'base'
into package 'externalVector'; the generic differs from the default conversion (Formal arguments differ: (x, na.rm, dims), (x, na.rm, dims, ...))
Creating a new generic function for "colMeans" in "externalVector"
Restoring the implicit generic function for 'rowSums' from package 'base'
into package 'externalVector'; the generic differs from the default conversion (Formal arguments differ: (x, na.rm, dims), (x, na.rm, dims, ...))
Creating a new generic function for "rowSums" in "externalVector"
Restoring the implicit generic function for 'rowMeans' from package 'base'
into package 'externalVector'; the generic differs from the default conversion (Formal arguments differ: (x, na.rm, dims), (x, na.rm, dims, ...))
Creating a new generic function for "rowMeans" in "externalVector"
Creating a new generic function for "apply" in "externalVector"
Creating a new generic function for "lapply" in "externalVector"
Creating a new generic function for "sapply" in "externalVector"
Creating a new generic function for "mean" in "externalVector"
Creating a new generic function for "median" in "externalVector"
Creating a generic for 'var' in package 'externalVector'
(the supplied definition differs from and overrides the implicit generic
in package 'stats': Formal arguments differ (in default values?))
Creating a generic for 'cov' in package 'externalVector'
(the supplied definition differs from and overrides the implicit generic
in package 'stats': Formal arguments differ (in default values?))
Creating a generic for 'cor' in package 'externalVector'
(the supplied definition differs from and overrides the implicit generic
in package 'stats': Formal arguments differ (in default values?))
Creating a new generic function for "cov2cor" in "externalVector"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (externalVector)