Package: maanova

Version: 1.18.0

Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings maanova_1.18.0.tar.gz

StartedAt: 2010-10-04 18:56:21 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 18:57:11 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 50.2 seconds

RetCode: 0

Status:  OK

CheckDir: maanova.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/maanova.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maanova/DESCRIPTION' ... OK
* this is package 'maanova' version '1.18.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maanova' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
read.madata: no visible global function definition for 'exprs'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'maanova' ...
** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c makeratio.c -o makeratio.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c masvd.c -o masvd.o
masvd.c:114:2: warning: "/*" within comment
masvd.c:154:1: warning: "/*" within comment
masvd.c:161:5: warning: "/*" within comment
masvd.c:165:2: warning: "/*" within comment
masvd.c:189:2: warning: "/*" within comment
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c shift.c -o shift.o
shift.c: In function 'shift':
shift.c:27: warning: unused variable 'k'
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c util.c -o util.o
gcc -shared -s -static-libgcc -o maanova.dll tmp.def makeratio.o masvd.o shift.o util.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lRlapack -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/maanova.Rcheck/maanova/libs
  ... done
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (maanova)

name	user	system	elapsed
PairContrast	0.00	0.03	0.03
Rmaanova.version	0	0	0
abf1	0	0	0
adjPval	0.00	0.01	0.01
arrayview	0	0	0
consensus	0.02	0.00	0.02
dyeswapfilter	0	0	0
fill.missing	0.26	0.00	0.26
fitmaanova	0.02	0.00	0.02
fom	0	0	0
geneprofile	0.00	0.02	0.01
gridcheck	0	0	0
kidney	0.09	0.02	0.11
maanova-internal	0.02	0.00	0.02
macluster	0	0	0
matest	0.00	0.01	0.01
read.madata	0	0	0
resiplot	0.01	0.00	0.02
riplot	0	0	0
subset.madata	0.08	0.00	0.08
summarytable	0	0	0
transform.madata	0.08	0.02	0.10
varplot	0.01	0.00	0.01
volcano	0	0	0
write.madata	0.02	0.00	0.02