Package: metahdep

Version: 1.6.0

Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings metahdep_1.6.0.tar.gz

StartedAt: 2010-10-04 19:08:30 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 19:09:26 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 55.3 seconds

RetCode: 0

Status:  OK

CheckDir: metahdep.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/metahdep.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'metahdep/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'metahdep' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'metahdep' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: metahdep.other.Rd:40-42: Dropping empty section \usage
prepare_Rd: metahdep.other.Rd:43-45: Dropping empty section \arguments
prepare_Rd: metahdep.other.Rd:46-48: Dropping empty section \value
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'metahdep' ...
** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c metahdep.c -o metahdep.o
metahdep.c: In function 'get_row_indices2':
metahdep.c:471: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast
gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/metahdep.Rcheck/metahdep/libs
  ... done
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (metahdep)

name	user	system	elapsed
ES.obj-class	0.03	0.00	0.03
HGU.DifExp.list	0	0	0
HGU.newnames	0.06	0.00	0.06
HGU.prep.list	0.03	0.00	0.03
getPLM.es	0	0	0
gloss	0	0	0
metahdep.FEMA	0.03	0.00	0.03
metahdep.HBLM	1.29	0.00	1.28
metahdep	9.94	0.01	10.00
metahdep.REMA	0.05	0.02	0.07
metahdep.format	2.59	0.01	2.61
metahdep.other	0.02	0.00	0.02
metaprep-class	0.03	0.00	0.03