Package: plateCore

Version: 1.6.0

Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings plateCore_1.6.0.tar.gz

StartedAt: 2010-10-04 18:08:01 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 18:12:03 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 241.8 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/plateCore.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: RColorBrewer

Attaching package: 'latticeExtra'

The following object(s) are masked from 'package:flowViz':

    ecdfplot

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (plateCore)

name	user	system	elapsed
Subset-methods	4.94	0.02	4.95
applyControlGates-methods	19.59	0.01	19.61
compensate-methods	7.33	0.00	7.33
compensationSet	0.21	0.00	0.20
densityplot-methods	2.21	0.00	2.22
fixAutoFl-methods	7.69	0.00	7.69
flowPlate-class	4.31	0.00	4.31
flowPlate-method	4.27	0.00	4.27
fpbind-methods	10.10	0.03	10.16
getGroups-methods	1.85	0.00	1.84
gutterPlot-methods	1.87	0.00	1.87
mfiPlot-methods	21.39	0.09	22.07
on-methods	11.85	0.03	11.87
panel.densityplot.flowPlate	2.26	0.02	2.28
panel.xyplot.flowPlate	2.10	0.02	2.11
plateCore-package	4.28	0.00	4.31
plateSet-methods	4.14	0.01	4.17
plotPlate-methods	4.83	0.00	4.83
prepanel.densityplot.flowPlate	2.03	0.00	2.03
prepanel.xyplot.flowPlate	2.07	0.02	2.08
setControlGates-methods	4.60	0.00	4.59
summaryStats-methods	20.37	0.01	20.39
wellAnnotation-methods	1.83	0.00	1.83
xyplot-methods	2.05	0.00	2.04