Package: quantsmooth

Version: 1.14.0

Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings quantsmooth_1.14.0.tar.gz

StartedAt: 2010-10-04 19:41:29 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 19:42:12 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 43.0 seconds

RetCode: 0

Status:  OK

CheckDir: quantsmooth.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/quantsmooth.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'quantsmooth/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'quantsmooth' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'quantsmooth' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
grid.chromosome: no visible binding for global variable 'chrom.bands'
lengthChromosome: no visible binding for global variable 'chrom.bands'
paintCytobands: no visible binding for global variable 'chrom.bands'
position2Cytoband: no visible binding for global variable 'chrom.bands'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'quantsmooth' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: SparseM
Package SparseM (0.86) loaded.
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

    backsolve

Loading required package: grid
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (quantsmooth)

name	user	system	elapsed
drawSimpleChrom	0.01	0.00	0.02
getChangedRegions	0.19	0.00	0.19
getLambdaMin	0.80	0.03	0.82
grid.chromosome	0.06	0.00	0.18
lengthChromosome	0.13	0.00	0.14
numericCHR	0	0	0
paintCytobands	0.09	0.00	0.09
plotSmoothed	0.14	0.02	0.15
position2Cytoband	0.06	0.01	0.08
quantsmooth	0.01	0.00	0.01
quantsmooth.cv	0.03	0.02	0.05
quantsmooth.seg	0.00	0.02	0.01