Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 113/462HostnameOS / ArchBUILDCHECKBUILD BIN
CRImage 1.3.0
Henrik Failmezger , Yinyin Yuan
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CRImage
Last Changed Rev: 54810 / Revision: 55359
Last Changed Date: 2011-04-13 18:14:51 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386 N O T   S U P P O R T E D

Summary

Package: CRImage
Version: 1.3.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings CRImage_1.3.0.tar.gz
StartedAt: 2011-05-09 12:09:24 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 12:11:50 -0700 (Mon, 09 May 2011)
EllapsedTime: 146.0 seconds
RetCode: 0
Status:  OK 
CheckDir: CRImage.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/CRImage.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CRImage/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CRImage’ version ‘1.3.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘CRImage’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 11.0Mb
  sub-directories of 1Mb or more:
    extdata   8.6Mb
    doc       2.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

CRImage.Rcheck/00install.out:

* installing *source* package ‘CRImage’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: abind
Xlib:  extension "RANDR" missing on display ":25112.0".
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘CRImage.Rnw’ 
** testing if installed package can be loaded
Xlib:  extension "RANDR" missing on display ":25112.0".

* DONE (CRImage)

CRImage.Rcheck/CRImage-Ex.timings:

nameusersystemelapsed
CRImage-package 9.984 0.36410.228
calculateCellularity11.237 0.31611.224
calculateThreshold2.0920.0242.043
classificationAperio1.0600.0001.421
classifyCells9.4010.0849.995
createClassifier1.0960.0081.105
createTrainingSet10.652 0.28010.229
determineCellularity10.805 0.10810.369
findSlices0.9120.0040.918
kernelSmoother9.5170.4049.771
localThreshold8.1240.2288.244
numberOfNeighbors7.8970.2807.961
paintCells9.6520.3209.837
parseFinalScan0.8840.0000.882
processAperio0.9640.0120.977
segmentCytoplasma7.5090.1447.462
segmentImage7.8960.1327.817