Package: GenomeGraphs

Version: 1.13.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings GenomeGraphs_1.13.0.tar.gz

StartedAt: 2011-05-09 17:11:11 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 17:13:43 -0700 (Mon, 09 May 2011)

EllapsedTime: 152.1 seconds

RetCode: 0

Status:  OK

CheckDir: GenomeGraphs.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.13.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GenomeGraphs.Rnw' 
** testing if installed package can be loaded

* DONE (GenomeGraphs)

name	user	system	elapsed
AnnotationTrack-class	0	0	0
BaseTrack-class	0	0	0
DisplayPars-class	0.00	0.02	0.02
DisplayPars	0.45	0.04	3.39
ExonArray-class	0	0	0
Gene-class	0	0	0
GeneModel-class	0.16	0.00	0.15
GeneRegion-class	0	0	0
GenericArray-class	0	0	0
GenomeAxis-class	0	0	0
HighlightRegion-class	0.02	0.00	0.02
Ideogram-class	0	0	0
ImplementsTrackOverlay-class	0	0	0
Legend-class	0	0	0
MappedRead-class	0	0	0
Overlay-class	0	0	0
RectangleOverlay-class	0	0	0
Segmentation-class	0	0	0
Smoothing-class	0	0	0
TextOverlay-class	0	0	0
Title-class	0	0	0
TrackOverlay-class	0.01	0.00	0.01
Transcript-class	0	0	0
TranscriptRegion-class	0	0	0
cn	0	0	0
exonProbePos	0	0	0
gdObject-class	0	0	0
gdPlot	1.77	0.00	54.38
getPar	0	0	0
getSize	0	0	0
ideogramTab	0	0	0
intensity	0	0	0
makeAnnotationTrack	0.08	0.00	0.08
makeBaseTrack	0	0	0
makeExonArray	0.01	0.00	0.01
makeGene	0	0	0
makeGeneModel	0	0	0
makeGeneRegion	0	0	0
makeGenericArray	0	0	0
makeGenomeAxis	0	0	0
makeIdeogram	0	0	0
makeLegend	0	0	0
makeRectangleOverlay	0.14	0.02	0.16
makeSegmentation	0.12	0.00	0.12
makeSmoothing	0.16	0.01	0.17
makeTextOverlay	0.14	0.00	0.14
makeTitle	0	0	0
makeTranscript	0	0	0
probestart	0	0	0
segEnd	0	0	0
segStart	0	0	0
segments	0	0	0
seqDataEx	0.02	0.00	0.01
setPar	0.02	0.00	0.02
showDisplayOptions	0	0	0
unrData	0	0	0
unrNProbes	0	0	0
unrPositions	0	0	0
yeastCons1	0	0	0