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Package 186/462HostnameOS / ArchBUILDCHECKBUILD BIN
GenomeGraphs 1.13.0
Steffen Durinck
Snapshot Date: 2011-05-05 07:21:10 -0700 (Thu, 05 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomeGraphs
Last Changed Rev: 54802 / Revision: 55269
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  TIMEOUT  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  TIMEOUT  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  OK  TIMEOUT  OK 

Summary

Package: GenomeGraphs
Version: 1.13.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings GenomeGraphs_1.13.0.tar.gz
StartedAt: 2011-05-05 13:01:55 -0700 (Thu, 05 May 2011)
EndedAt: 2011-05-05 13:05:02 -0700 (Thu, 05 May 2011)
EllapsedTime: 186.5 seconds
RetCode: 0
Status:  OK 
CheckDir: GenomeGraphs.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/GenomeGraphs.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GenomeGraphs/DESCRIPTION’ ... OK
* this is package ‘GenomeGraphs’ version ‘1.13.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GenomeGraphs’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GenomeGraphs.Rcheck/00install.out:

* installing *source* package ‘GenomeGraphs’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘GenomeGraphs.Rnw’ 
** testing if installed package can be loaded

* DONE (GenomeGraphs)

GenomeGraphs.Rcheck/GenomeGraphs-Ex.timings:

nameusersystemelapsed
AnnotationTrack-class0.0040.0000.002
BaseTrack-class000
DisplayPars-class0.0000.0040.001
DisplayPars0.4200.0083.452
ExonArray-class0.0040.0000.004
Gene-class000
GeneModel-class0.1880.0000.189
GeneRegion-class000
GenericArray-class000
GenomeAxis-class0.0000.0000.001
HighlightRegion-class0.0000.0000.001
Ideogram-class0.0000.0000.001
ImplementsTrackOverlay-class0.0000.0000.001
Legend-class000
MappedRead-class000
Overlay-class0.0000.0000.001
RectangleOverlay-class0.0000.0000.001
Segmentation-class000
Smoothing-class0.0000.0000.001
TextOverlay-class0.0000.0000.001
Title-class000
TrackOverlay-class0.0000.0000.001
Transcript-class0.0000.0000.001
TranscriptRegion-class0.0000.0000.001
cn000
exonProbePos000
gdObject-class0.0000.0000.001
gdPlot 1.844 0.008141.050
getPar0.0040.0000.002
getSize000
ideogramTab0.0040.0000.004
intensity000
makeAnnotationTrack0.1160.0000.113
makeBaseTrack0.0000.0000.001
makeExonArray0.0000.0000.002
makeGene0.0000.0000.001
makeGeneModel0.0000.0000.001
makeGeneRegion0.0000.0000.001
makeGenericArray0.0040.0000.001
makeGenomeAxis0.0000.0000.001
makeIdeogram0.0000.0000.001
makeLegend0.0000.0000.001
makeRectangleOverlay0.0720.0000.073
makeSegmentation0.0560.0040.058
makeSmoothing0.0760.0000.077
makeTextOverlay0.0600.0000.065
makeTitle0.0000.0000.001
makeTranscript0.0040.0000.001
probestart000
segEnd000
segStart000
segments000
seqDataEx0.0200.0000.022
setPar0.0120.0000.013
showDisplayOptions0.0000.0000.001
unrData000
unrNProbes000
unrPositions000
yeastCons1000