MANOR 1.25.0
Pierre Neuvial
| Snapshot Date: 2011-05-07 07:21:09 -0700 (Sat, 07 May 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MANOR | | Last Changed Rev: 55306 / Revision: 55315 | | Last Changed Date: 2011-05-06 14:50:44 -0700 (Fri, 06 May 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'MANOR' ...
** libs
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c Rnem_arg.c -o Rnem_arg.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c Rnem_exe.c -o Rnem_exe.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c exememo.c -o exememo.o
exememo.c: In function 'GenAlloc':
exememo.c:39:6: warning: format '%ld' expects type 'long int', but argument 5 has type 'size_t'
exememo.c:39:6: warning: format '%ld' expects type 'long int', but argument 6 has type 'size_t'
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c lib_io.c -o lib_io.o
lib_io.c: In function 'CountLinesColumns':
lib_io.c:354:13: warning: 'mincols' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c nem_alg.c -o nem_alg.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c nem_hlp.c -o nem_hlp.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c nem_mod.c -o nem_mod.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c nem_nei.c -o nem_nei.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c nem_rnd.c -o nem_rnd.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c nem_ver.c -o nem_ver.o
gcc -shared -s -static-libgcc -o MANOR.dll tmp.def Rnem_arg.o Rnem_exe.o exememo.o lib_io.o nem_alg.o nem_hlp.o nem_mod.o nem_nei.o nem_rnd.o nem_ver.o -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/MANOR.buildbin-libdir/MANOR/libs/i386
** R
** data
** inst
** preparing package for lazy loading
######################################################################################
Have fun with GLAD
For smoothing it is possible to use either
the AWS algorithm (Polzehl and Spokoiny, 2002)
or the HaarSeg algorithm (Ben-Yaacov and Eldar, Bioinformatics, 2008)
If you use the package with AWS, please cite:
Hupe et al. (Bioinformatics, 2004) and Polzehl and Spokoiny (2002)
If you use the package with HaarSeg, please cite:
Hupe et al. (Bioinformatics, 2004) and (Ben-Yaacov and Eldar, Bioinformatics, 2008)
For fast computation it is recommanded to use
the daglad function with smoothfunc=haarseg
######################################################################################
New options are available in daglad: see help for details.
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'MANOR.Rnw'
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MANOR' as MANOR_1.25.0.zip
* DONE (MANOR)