Package: Rmagpie

Version: 1.9.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings Rmagpie_1.9.0.tar.gz

StartedAt: 2011-05-09 19:32:11 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 19:34:29 -0700 (Mon, 09 May 2011)

EllapsedTime: 138.1 seconds

RetCode: 0

Status:  OK

CheckDir: Rmagpie.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/Rmagpie.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Rmagpie/DESCRIPTION' ... OK
* this is package 'Rmagpie' version '1.9.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rmagpie' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'Rmagpie' ...
** R
** data
** demo
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'Magpie_examples.Rnw' using 'latin1' 
** testing if installed package can be loaded

* DONE (Rmagpie)

name	user	system	elapsed
classifyNewSamples-methods	2.32	0.00	2.33
experiment-class	0.07	0.00	0.06
finalClassifier-class	0.11	0.00	0.11
findFinalClassifier-methods	0.28	0.00	0.28
geneSubsets-class	0.01	0.00	0.02
getDataset-methods	0.02	0.00	0.01
getFeatureSelectionOptions-methods	0.01	0.00	0.02
getFinalClassifier	0.25	0.01	0.27
getResults-methods	7.32	0.02	7.32
plotErrorsFoldTwoLayerCV-methods	7.26	0.00	7.27
plotErrorsRepeatedOneLayerCV	1.5	0.0	1.5
plotErrorsSummaryOneLayerCV-methods	1.28	0.00	1.29
rankedGenesImg-methods	0	0	0
runOneLayerExtCV-methods	1.10	0.00	1.09
runTwoLayerExtCV-methods	13.54	0.00	13.55
setDataset-methods	0	0	0
setFeatureSelectionOptions-methods	0.02	0.00	0.01
thresholds-class	0	0	0
vV70genes	0.02	0.00	0.02