a4Classif 1.1.1
Tobias Verbeke
| Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/a4Classif | | Last Changed Rev: 54829 / Revision: 55359 | | Last Changed Date: 2011-04-14 10:40:06 -0700 (Thu, 14 Apr 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | [ ERROR ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | ERROR | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | ERROR | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | ERROR | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/a4Classif.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘a4Classif/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘a4Classif’ version ‘1.1.1’
* checking package name space information ... OK
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* checking if this is a source package ... OK
* checking whether package ‘a4Classif’ can be installed ... OK
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* checking for unstated dependencies in examples ... OK
* checking examples ... ERROR
Running examples in ‘a4Classif-Ex.R’ failed
The error most likely occurred in:
> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lassoClass
> ### Title: Classify using the Lasso
> ### Aliases: lassoClass
> ### Keywords: models
>
> ### ** Examples
>
> if (require(ALL)){
+ data(ALL, package = "ALL")
+ ALL <- addGeneInfo(ALL)
+ ALL$BTtype <- as.factor(substr(ALL$BT,0,1))
+
+ resultLasso <- lassoClass(object = ALL, groups = "BTtype")
+ plot(resultLasso, label = TRUE,
+ main = "Lasso coefficients in relation to degree of penalization.")
+ featResultLasso <- topTable(resultLasso, n = 15)
+ }
Loading required package: ALL
Loading required package: hgu95av2.db
Loading required package: org.Hs.eg.db
Error in function (classes, fdef, mtable) :
unable to find an inherited method for function "topTable", for signature "lognet"
Calls: topTable -> <Anonymous>
Execution halted
* installing *source* package ‘a4Classif’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
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'citation("Biobase")' and for packages 'citation("pkgname")'.
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** help
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* DONE (a4Classif)