Package: adSplit

Version: 1.23.0

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings adSplit_1.23.0.tar.gz

StartedAt: 2011-05-09 12:05:37 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 12:09:06 -0700 (Mon, 09 May 2011)

EllapsedTime: 208.9 seconds

RetCode: 0

Status:  OK

CheckDir: adSplit.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/adSplit.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'adSplit/DESCRIPTION' ... OK
* this is package 'adSplit' version '1.23.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'adSplit' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'adSplit' ...
** libs
g++  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -c adSplit.cpp -o adSplit.o
adSplit.cpp: In function 'double tscore(double*, int, int, split&, isis_pars&)':
adSplit.cpp:256:77: warning: deprecated conversion from string constant to 'char*'
adSplit.cpp: In function 'void isis(char**, double*, int*, int*, int*, int*, int*, double*, int*)':
adSplit.cpp:469:67: warning: deprecated conversion from string constant to 'char*'
g++ -shared -s -static-libgcc -o adSplit.dll tmp.def adSplit.o -LE:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/adSplit.Rcheck/adSplit/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Loading required package: DBI


** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'tr_2005_02.Rnw' 
** testing if installed package can be loaded

* DONE (adSplit)

name	user	system	elapsed
adSplit	2.50	0.11	5.21
diana2means	2.41	0.03	2.47
drawRandomPS	36.78	0.83	39.10
golubKEGGSplits	0	0	0
hist.splitSet	0.02	0.00	0.01
image.splitSet	0.12	0.02	0.17
makeEID2PROBESenv	36.53	0.78	37.41
print.splitSet	0	0	0
randomDiana2means	40.30	0.78	41.67