Package: affyPara

Version: 1.13.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings affyPara_1.13.0.tar.gz

StartedAt: 2011-05-09 14:25:56 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 14:28:18 -0700 (Mon, 09 May 2011)

EllapsedTime: 142.5 seconds

RetCode: 0

Status:  OK

CheckDir: affyPara.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/affyPara.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'affyPara/DESCRIPTION' ... OK
* this is package 'affyPara' version '1.13.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affyPara' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'affyPara' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.


Attaching package: 'snow'

The following object(s) are masked from 'package:base':

    enquote

Loading required package: tcltk
Loading Tcl/Tk interface ... done
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'affyPara.Rnw' 
   'vsnStudy.Rnw' 
** testing if installed package can be loaded

* DONE (affyPara)

name	user	system	elapsed
MAplotPara	0	0	0
bgcPara	0	0	0
boxplotPara	0	0	0
computeExprSetPara	0	0	0
distributeFiles	0	0	0
mergeSplitObjects	4.33	0.41	4.95
normalizeAffyBatchConstantPara	0	0	0
normalizeAffyBatchInvariantsetPara	0	0	0
normalizeAffyBatchLoessPara	0	0	0
normalizeAffyBatchLoessParaIter	0	0	0
normalizeAffyBatchQuantilesPara	0	0	0
preproPara	0	0	0
qa	0	0	0
readAffybatchPara	0	0	0
removeDistributedFiles	0	0	0
rmaPara	0	0	0
snowReplace	0	0	0
split	1.66	0.11	1.98
vsnPara	0	0	0