chopsticks 1.17.1
Hin-Tak Leung
| Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/chopsticks | | Last Changed Rev: 55058 / Revision: 55359 | | Last Changed Date: 2011-04-24 21:27:03 -0700 (Sun, 24 Apr 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'chopsticks' ...
** libs
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c adler32.c -o adler32.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c bind.c -o bind.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c compress.c -o compress.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c count_gt.c -o count_gt.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c covwin.c -o covwin.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c crc32.c -o crc32.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c deflate.c -o deflate.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c force_hom.c -o force_hom.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c fst.c -o fst.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c glm_test.c -o glm_test.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c glm_test_R.c -o glm_test_R.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c gzclose.c -o gzclose.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c gzlib.c -o gzlib.o
gzlib.c: In function 'gz_error':
gzlib.c:518:1: warning: visibility attribute not supported in this configuration; ignored
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c gzread.c -o gzread.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c gzwrite.c -o gzwrite.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c hash_index.c -o hash_index.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c hphase.c -o hphase.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c ibs.c -o ibs.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c imputation.c -o imputation.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c in.c -o in.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c infback.c -o infback.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c inffast.c -o inffast.o
inffast.c: In function 'inflate_fast':
inffast.c:324:1: warning: visibility attribute not supported in this configuration; ignored
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c inflate.c -o inflate.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c inftrees.c -o inftrees.o
inftrees.c: In function 'inflate_table':
inftrees.c:330:1: warning: visibility attribute not supported in this configuration; ignored
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c input.c -o input.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c invert.c -o invert.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c ipf.c -o ipf.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c ld_graphic_eps.c -o ld_graphic_eps.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c ld_with.c -o ld_with.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c misc.c -o misc.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c mla.c -o mla.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c outdata.c -o outdata.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c pairwise_linkage.c -o pairwise_linkage.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c plink.c -o plink.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c read_chiamo.c -o read_chiamo.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c read_hapmap.c -o read_hapmap.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c read_pedfile.c -o read_pedfile.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c read_signals.c -o read_signals.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c read_uncertain.c -o read_uncertain.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c readped.c -o readped.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c sdfpw.c -o sdfpw.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c single_snp_tests.c -o single_snp_tests.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c snp_summary.c -o snp_summary.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c snpmpy.c -o snpmpy.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c solve_cubic.c -o solve_cubic.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c solve_quadratic.c -o solve_quadratic.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c structure.c -o structure.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c switch.c -o switch.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c tdt.c -o tdt.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c trees.c -o trees.o
trees.c: In function '_tr_init':
trees.c:410:1: warning: visibility attribute not supported in this configuration; ignored
trees.c: In function '_tr_stored_block':
trees.c:883:1: warning: visibility attribute not supported in this configuration; ignored
trees.c: In function '_tr_align':
trees.c:919:1: warning: visibility attribute not supported in this configuration; ignored
trees.c: In function '_tr_flush_block':
trees.c:1020:1: warning: visibility attribute not supported in this configuration; ignored
trees.c: In function '_tr_tally':
trees.c:1071:1: warning: visibility attribute not supported in this configuration; ignored
trees.c: At top level:
trees.c:1244:1: warning: visibility attribute not supported in this configuration; ignored
trees.c:1244:1: warning: visibility attribute not supported in this configuration; ignored
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c uncertain.c -o uncertain.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c uncompr.c -o uncompr.o
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -O3 -Wall -std=gnu99 -c zutil.c -o zutil.o
zutil.c: In function 'zcalloc':
zutil.c:308:1: warning: visibility attribute not supported in this configuration; ignored
zutil.c: In function 'zcfree':
zutil.c:316:1: warning: visibility attribute not supported in this configuration; ignored
gcc -shared -s -static-libgcc -o chopsticks.dll tmp.def adler32.o bind.o compress.o count_gt.o covwin.o crc32.o deflate.o force_hom.o fst.o glm_test.o glm_test_R.o gzclose.o gzlib.o gzread.o gzwrite.o hash_index.o hphase.o ibs.o imputation.o in.o infback.o inffast.o inflate.o inftrees.o input.o invert.o ipf.o ld_graphic_eps.o ld_with.o misc.o mla.o outdata.o pairwise_linkage.o plink.o read_chiamo.o read_hapmap.o read_pedfile.o read_signals.o read_uncertain.o readped.o sdfpw.o single_snp_tests.o snp_summary.o snpmpy.o solve_cubic.o solve_quadratic.o structure.o switch.o tdt.o trees.o uncertain.o uncompr.o zutil.o -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/chopsticks.buildbin-libdir/chopsticks/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Loading required package: splines
Creating a new generic function for "plot" in "chopsticks"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'chopsticks-vignette.Rnw'
'clustering-comparison-vignette.Rnw'
'imputation-vignette.Rnw'
'pca-vignette.Rnw'
'tdt-vignette.Rnw'
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'chopsticks' as chopsticks_1.17.1.zip
* DONE (chopsticks)