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Package 111/462HostnameOS / ArchBUILDCHECKBUILD BIN
cosmo 1.19.0
Oliver Bembom
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/cosmo
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: cosmo
Version: 1.19.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh cosmo_1.19.0.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R cosmo.buildbin-libdir
StartedAt: 2011-05-09 17:49:25 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 17:50:27 -0700 (Mon, 09 May 2011)
EllapsedTime: 62.1 seconds
RetCode: 0
Status:  OK 
PackageFile: cosmo_1.19.0.tgz
PackageFileSize: 1.233 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=cosmo.buildbin-libdir cosmo_1.19.0.tar.gz'
>>>>>>> 

* installing *source* package ‘cosmo’ ...
rm: src/*.o: No such file or directory
rm: src/*.so: No such file or directory
rm: Makevars: No such file or directory
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c alloc.c -o alloc.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c back.c -o back.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c constraints.c -o constraints.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c cosmo.c -o cosmo.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c cregistration.c -o cregistration.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c donlp2.c -o donlp2.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c estarts.c -o estarts.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c eval.c -o eval.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c fit.c -o fit.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c free.c -o free.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c init.c -o init.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c io.c -o io.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c lstarts.c -o lstarts.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c matLib.c -o matLib.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c newx.c -o newx.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c optimize.c -o optimize.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c posterior.c -o posterior.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c precalc.c -o precalc.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c rio.c -o rio.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c theta.c -o theta.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c user_eval.c -o user_eval.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c xml.c -o xml.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o cosmo.so alloc.o back.o constraints.o cosmo.o cregistration.o donlp2.o estarts.o eval.o fit.o free.o init.o io.o lstarts.o matLib.o newx.o optimize.o posterior.o precalc.o rio.o theta.o user_eval.o xml.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/cosmo.buildbin-libdir/cosmo/libs/i386
*** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c alloc.c -o alloc.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c back.c -o back.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c constraints.c -o constraints.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c cosmo.c -o cosmo.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c cregistration.c -o cregistration.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c donlp2.c -o donlp2.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c estarts.c -o estarts.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c eval.c -o eval.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c fit.c -o fit.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c free.c -o free.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c init.c -o init.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c io.c -o io.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c lstarts.c -o lstarts.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c matLib.c -o matLib.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c newx.c -o newx.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c optimize.c -o optimize.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c posterior.c -o posterior.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c precalc.c -o precalc.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c rio.c -o rio.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c theta.c -o theta.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c user_eval.c -o user_eval.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c xml.c -o xml.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o cosmo.so alloc.o back.o constraints.o cosmo.o cregistration.o donlp2.o estarts.o eval.o fit.o free.o init.o io.o lstarts.o matLib.o newx.o optimize.o posterior.o precalc.o rio.o theta.o user_eval.o xml.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/cosmo.buildbin-libdir/cosmo/libs/ppc
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c alloc.c -o alloc.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c back.c -o back.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c constraints.c -o constraints.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c cosmo.c -o cosmo.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c cregistration.c -o cregistration.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c donlp2.c -o donlp2.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c estarts.c -o estarts.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c eval.c -o eval.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c fit.c -o fit.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c free.c -o free.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c init.c -o init.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c io.c -o io.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c lstarts.c -o lstarts.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c matLib.c -o matLib.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c newx.c -o newx.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c optimize.c -o optimize.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c posterior.c -o posterior.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c precalc.c -o precalc.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c rio.c -o rio.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c theta.c -o theta.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c user_eval.c -o user_eval.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -IINCLUDE -I/usr/local/include    -fPIC  -g -O2 -c xml.c -o xml.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o cosmo.so alloc.o back.o constraints.o cosmo.o cregistration.o donlp2.o estarts.o eval.o fit.o free.o init.o io.o lstarts.o matLib.o newx.o optimize.o posterior.o precalc.o rio.o theta.o user_eval.o xml.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/cosmo.buildbin-libdir/cosmo/libs/x86_64
** R
** data
** inst
** preparing package for lazy loading
Loading required package: grid
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘cosmo.Rnw’ 
** testing if installed package can be loaded

Welcome to cosmo version 1.19.0 

cosmo is free for research purposes only. For more details, type
license.cosmo(). Type citation('cosmo') for details on how to cite
cosmo in publications.

* DONE (cosmo)


>>>>>>> 
>>>>>>> FIXING LINKS FOR cosmo.buildbin-libdir/cosmo/libs/i386/cosmo.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "cosmo.buildbin-libdir/cosmo/libs/i386/cosmo.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "cosmo.buildbin-libdir/cosmo/libs/i386/cosmo.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "cosmo.buildbin-libdir/cosmo/libs/i386/cosmo.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "cosmo.buildbin-libdir/cosmo/libs/i386/cosmo.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR cosmo.buildbin-libdir/cosmo/libs/ppc/cosmo.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "cosmo.buildbin-libdir/cosmo/libs/ppc/cosmo.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "cosmo.buildbin-libdir/cosmo/libs/ppc/cosmo.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "cosmo.buildbin-libdir/cosmo/libs/ppc/cosmo.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "cosmo.buildbin-libdir/cosmo/libs/ppc/cosmo.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR cosmo.buildbin-libdir/cosmo/libs/x86_64/cosmo.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "cosmo.buildbin-libdir/cosmo/libs/x86_64/cosmo.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "cosmo.buildbin-libdir/cosmo/libs/x86_64/cosmo.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "cosmo.buildbin-libdir/cosmo/libs/x86_64/cosmo.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "cosmo.buildbin-libdir/cosmo/libs/x86_64/cosmo.so"