Package: flowMeans

Version: 1.5.0

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowMeans_1.5.0.tar.gz

StartedAt: 2011-05-09 14:27:07 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 14:28:49 -0700 (Mon, 09 May 2011)

EllapsedTime: 102.8 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: flowMeans.Rcheck

Warnings: 1

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/flowMeans.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowMeans/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowMeans’ version ‘1.5.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘flowMeans’ can be installed ... WARNING
Found the following significant warnings:
  Warning: value of 'results' option should be lowercase
See ‘/Users/biocbuild/bbs-2.9-bioc/meat/flowMeans.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
  installed size is 13.7Mb
  sub-directories of 1Mb or more:
    doc  13.4Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... NOTE
  ‘qpdf’ made some significant size reductions:
     compacted ‘flowMeans.pdf’ from 13.4Mb to 1.5Mb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/Users/biocbuild/bbs-2.9-bioc/meat/flowMeans.Rcheck/00check.log’
for details

* installing *source* package ‘flowMeans’ ...
** R
** data
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)
Creating a new generic function for "summary" in "flowMeans"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘flowMeans.Rnw’ 
Warning: value of 'results' option should be lowercase
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)

* DONE (flowMeans)

name	user	system	elapsed
changepointDetection	5.454	0.803	6.343
flowMeans-package	5.090	0.714	5.865
flowMeans	4.954	0.685	5.796
plot	1.649	0.259	2.067
x	0.039	0.002	0.047