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BioC 3.1: CHECK report for RCyjs on petty

This page was generated on 2015-06-30 10:45:03 -0700 (Tue, 30 Jun 2015).

Package 795/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCyjs 1.0.0
Paul Shannon
Snapshot Date: 2015-06-29 17:20:08 -0700 (Mon, 29 Jun 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/RCyjs
Last Changed Rev: 102591 / Revision: 105643
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ ERROR ] OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: RCyjs
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RCyjs_1.0.0.tar.gz
StartedAt: 2015-06-30 03:00:08 -0700 (Tue, 30 Jun 2015)
EndedAt: 2015-06-30 03:02:51 -0700 (Tue, 30 Jun 2015)
EllapsedTime: 163.0 seconds
RetCode: 1
Status:  ERROR 
CheckDir: RCyjs.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RCyjs_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.1-bioc/meat/RCyjs.Rcheck’
* using R version 3.2.1 (2015-06-18)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RCyjs/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RCyjs’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RCyjs’ can be installed ... [5s/6s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘Rcpp’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘RCyjs-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: RCyjsClass
> ### Title: RCyjs: Interactive R/browser network visualization, using
> ###   cytoscape.js
> ### Aliases: RCyjs class:RCyjsClass RCyjsClass-class show,RCyjsClass-method
> ###   setGraph setGraph,RCyjsClass-method \S4method{setGraph}{RCyjsClass}
> ###   getNodes getNodes,RCyjsClass-method \S4method{getNodes}{RCyjsClass}
> ###   setDefaultNodeSize setDefaultNodeSize,RCyjsClass-method
> ###   \S4method{setDefaultNodeSize}{RCyjsClass} setDefaultNodeWidth
> ###   setDefaultNodeWidth,RCyjsClass-method
> ###   \S4method{setDefaultNodeWidth}{RCyjsClass} setDefaultNodeHeight
> ###   setDefaultNodeHeight,RCyjsClass-method
> ###   \S4method{setDefaultNodeHeight}{RCyjsClass} setDefaultNodeColor
> ###   setDefaultNodeColor,RCyjsClass-method
> ###   \S4method{setDefaultNodeColor}{RCyjsClass} setDefaultNodeShape
> ###   setDefaultNodeShape,RCyjsClass-method
> ###   \S4method{setDefaultNodeShape}{RCyjsClass} setDefaultNodeFontColor
> ###   setDefaultNodeFontColor,RCyjsClass-method
> ###   \S4method{setDefaultNodeFontColor}{RCyjsClass} setDefaultNodeFontSize
> ###   setDefaultNodeFontSize,RCyjsClass-method
> ###   \S4method{setDefaultNodeFontSize}{RCyjsClass}
> ###   setDefaultNodeBorderWidth setDefaultNodeBorderWidth,RCyjsClass-method
> ###   \S4method{setDefaultNodeBorderWidth}{RCyjsClass}
> ###   setDefaultNodeBorderColor setDefaultNodeBorderColor,RCyjsClass-method
> ###   \S4method{setDefaultNodeBorderColor}{RCyjsClass}
> ###   setDefaultEdgeFontSize setDefaultEdgeFontSize,RCyjsClass-method
> ###   \S4method{setDefaultEdgeFontSize}{RCyjsClass}
> ###   setDefaultEdgeTargetArrowShape
> ###   setDefaultEdgeTargetArrowShape,RCyjsClass-method
> ###   \S4method{setDefaultEdgeTargetArrowShape}{RCyjsClass}
> ###   setDefaultEdgeColor setDefaultEdgeColor,RCyjsClass-method
> ###   \S4method{setDefaultEdgeColor}{RCyjsClass}
> ###   setDefaultEdgeTargetArrowColor
> ###   setDefaultEdgeTargetArrowColor,RCyjsClass-method
> ###   \S4method{setDefaultEdgeTargetArrowColor}{RCyjsClass}
> ###   setDefaultEdgeFontSize setDefaultEdgeFontSize,RCyjsClass-method
> ###   \S4method{setDefaultEdgeFontSize}{RCyjsClass} setDefaultEdgeWidth
> ###   setDefaultEdgeWidth,RCyjsClass-method
> ###   \S4method{setDefaultEdgeWidth}{RCyjsClass} setDefaultEdgeLineColor
> ###   setDefaultEdgeLineColor,RCyjsClass-method
> ###   \S4method{setDefaultEdgeLineColor}{RCyjsClass} setDefaultEdgeFont
> ###   setDefaultEdgeFont,RCyjsClass-method
> ###   \S4method{setDefaultEdgeFont}{RCyjsClass} setDefaultEdgeFontWeight
> ###   setDefaultEdgeFontWeight,RCyjsClass-method
> ###   \S4method{setDefaultEdgeFontWeight}{RCyjsClass}
> ###   setDefaultEdgeTextOpacity setDefaultEdgeTextOpacity,RCyjsClass-method
> ###   \S4method{setDefaultEdgeTextOpacity}{RCyjsClass}
> ###   setDefaultEdgeLineStyle setDefaultEdgeLineStyle,RCyjsClass-method
> ###   \S4method{setDefaultEdgeLineStyle}{RCyjsClass} setDefaultEdgeOpacity
> ###   setDefaultEdgeOpacity,RCyjsClass-method
> ###   \S4method{setDefaultEdgeOpacity}{RCyjsClass}
> ###   setDefaultEdgeSourceArrowColor
> ###   setDefaultEdgeSourceArrowColor,RCyjsClass-method
> ###   \S4method{setDefaultEdgeSourceArrowColor}{RCyjsClass}
> ###   setDefaultEdgeSourceArrowShape
> ###   setDefaultEdgeSourceArrowShape,RCyjsClass-method
> ###   \S4method{setDefaultEdgeSourceArrowShape}{RCyjsClass}
> ###   getSelectedNodes getSelectedNodes,RCyjsClass-method
> ###   \S4method{getSelectedNodes}{RCyjsClass} setNodeLabelRule
> ###   setNodeLabelRule,RCyjsClass-method
> ###   \S4method{setNodeLabelRule}{RCyjsClass} setNodeLabelAlignment
> ###   setNodeLabelAlignment,RCyjsClass-method
> ###   \S4method{setNodeLabelAlignment}{RCyjsClass} setNodeSizeRule
> ###   setNodeSizeRule,RCyjsClass-method
> ###   \S4method{setNodeSizeRule}{RCyjsClass} setNodeColorRule
> ###   setNodeColorRule,RCyjsClass-method
> ###   \S4method{setNodeColorRule}{RCyjsClass} setNodeShapeRule
> ###   setNodeShapeRule,RCyjsClass-method
> ###   \S4method{setNodeShapeRule}{RCyjsClass} setEdgeColorRule
> ###   setEdgeColorRule,RCyjsClass-method
> ###   \S4method{setEdgeColorRule}{RCyjsClass} setEdgeWidthRule
> ###   setEdgeWidthRule,RCyjsClass-method
> ###   \S4method{setEdgeWidthRule}{RCyjsClass} setEdgeTargetArrowShapeRule
> ###   setEdgeTargetArrowShapeRule,RCyjsClass-method
> ###   \S4method{setEdgeTargetArrowShapeRule}{RCyjsClass}
> ###   setEdgeTargetArrowColorRule
> ###   setEdgeTargetArrowColorRule,RCyjsClass-method
> ###   \S4method{setEdgeTargetArrowColorRule}{RCyjsClass}
> ###   setEdgeSourceArrowShapeRule
> ###   setEdgeSourceArrowShapeRule,RCyjsClass-method
> ###   \S4method{setEdgeSourceArrowShapeRule}{RCyjsClass}
> ###   setEdgeSourceArrowColorRule
> ###   setEdgeSourceArrowColorRule,RCyjsClass-method
> ###   \S4method{setEdgeSourceArrowColorRule}{RCyjsClass} redraw
> ###   redraw,RCyjsClass-method \S4method{redraw}{RCyjsClass}
> ###   layoutStrategies layoutStrategies,RCyjsClass-method
> ###   \S4method{layoutStrategies}{RCyjsClass} layout
> ###   layout,RCyjsClass-method \S4method{layout}{RCyjsClass} getPosition
> ###   getPosition,RCyjsClass-method \S4method{getPosition}{RCyjsClass}
> ###   setPosition setPosition,RCyjsClass-method
> ###   \S4method{setPosition}{RCyjsClass} getLayout
> ###   getLayout,RCyjsClass-method \S4method{getLayout}{RCyjsClass}
> ###   saveLayout saveLayout,RCyjsClass-method
> ###   \S4method{saveLayout}{RCyjsClass} restoreLayout
> ###   restoreLayout,RCyjsClass-method \S4method{restoreLayout}{RCyjsClass}
> ###   fitContent fitContent,RCyjsClass-method
> ###   \S4method{fitContent}{RCyjsClass} fitSelectedContent
> ###   fitSelectedContent,RCyjsClass-method
> ###   \S4method{fitSelectedContent}{RCyjsClass} selectNodes
> ###   selectNodes,RCyjsClass-method \S4method{selectNodes}{RCyjsClass}
> ###   clearSelection clearSelection,RCyjsClass-method
> ###   \S4method{clearSelection}{RCyjsClass} getZoom
> ###   getZoom,RCyjsClass-method \S4method{getZoom}{RCyjsClass} setZoom
> ###   setZoom,RCyjsClass-method \S4method{setZoom}{RCyjsClass}
> ###   setBackgroundColor setBackgroundColor,RCyjsClass-method
> ###   \S4method{setBackgroundColor}{RCyjsClass} biocGraphToCytoscapeJSON
> ###   createTestGraph eda edaNames noa noaNames simpleDemoGraph
> ### Keywords: classes methods
> 
> ### ** Examples
> 
>    library(RCyjs)
>     
>    g <- simpleDemoGraph()  # a 3-node, 3-edge graph with some node and edge attributes
>    noaNames(g)
[1] "type"  "lfc"   "label" "count"
>    edaNames(g)
[1] "edgeType" "score"    "misc"    
>    
>    rcy <- RCyjs(portRange=9047:9057, quiet=TRUE, graph=g);
Error: totalWait < maxWaitPermitted is not TRUE
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’ [7s/87s]
 ERROR
Running the tests in ‘tests/runTests.R’ failed.
Last 13 lines of output:
       test.setGraph 
       test.setNodeColorRule 
       test.setNodeDefaults 
       test.setNodeLabelAlignment 
       test.setNodeLabelRule 
       test.setNodeShapeRule 
       test.setNodeSizeRule 
       test.zoom 
  
  
  Error in BiocGenerics:::testPackage("RCyjs") : 
    unit tests failed for package RCyjs
  Execution halted
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: ‘org.Hs.eg.db’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.1-bioc/meat/RCyjs.Rcheck/00check.log’
for details.

RCyjs.Rcheck/tests/runTests.Rout.fail:


R version 3.2.1 (2015-06-18) -- "World-Famous Astronaut"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin10.8.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("RCyjs")

Attaching package: 'jsonlite'

The following object is masked from 'package:utils':

    View


Attaching package: 'BrowserViz'

The following object is masked from 'package:jsonlite':

    toJSON


Attaching package: 'RCyjs'

The following object is masked from 'package:graphics':

    layout

[1] "--- test.bigGraph"
Timing stopped at: 0.705 0.078 10.788 
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- test.constructor"
Timing stopped at: 0.029 0.006 10.045 
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- test.constructorWithGraph"
Timing stopped at: 0.054 0.007 10.066 
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- test.getSetPosition"
Timing stopped at: 0.046 0.007 10.058 
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- test.layouts"
Timing stopped at: 0.043 0.006 10.058 
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- test.layoutStrategies"
Timing stopped at: 0.05 0.008 10.069 
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- test.nodeSelection"
Timing stopped at: 0.049 0.007 10.067 
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- test.setBackgroundColor"
Timing stopped at: 0.057 0.007 10.071 
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- test.setEdgeArrowLookupRules"
Timing stopped at: 0.045 0.001 0.046 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setEdgeColorRule"
Timing stopped at: 0.047 0.001 0.049 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setEdgeDefaults"
Timing stopped at: 0.041 0.001 0.042 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setEdgeSourceArrowColorRule"
Timing stopped at: 0.042 0.001 0.042 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setEdgeSourceArrowShapeRule"
Timing stopped at: 0.042 0.001 0.043 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setEdgeTargetArrowColorRule"
Timing stopped at: 0.044 0.001 0.045 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setEdgeWidthRule"
Timing stopped at: 0.04 0.001 0.04 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setGraph"
Timing stopped at: 0.031 0.001 0.032 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setNodeLabelRule"
Timing stopped at: 0.044 0.001 0.044 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setNodeDefaults"
Timing stopped at: 0.043 0.001 0.044 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setNodeLabelRule"
Timing stopped at: 0.039 0.001 0.04 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setNodeLabelRule"
Timing stopped at: 0.041 0.001 0.045 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setNodeLabelRule"
Timing stopped at: 0.042 0.001 0.046 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.setNodeLabelRule"
Timing stopped at: 0.042 0.001 0.043 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
[1] "--- test.zoom"
Timing stopped at: 0.043 0.001 0.044 
Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057


RUNIT TEST PROTOCOL -- Tue Jun 30 03:02:44 2015 
*********************************************** 
Number of test functions: 24 
Number of errors: 23 
Number of failures: 0 

 
1 Test Suite : 
RCyjs RUnit Tests - 24 test functions, 23 errors, 0 failures
ERROR in test.bigGraph: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in test.constructorNoGraph: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in test.constructorWithGraph: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in test.getSetPosition: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in test.layouts: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in test.layoutStrategies: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in test.nodeSelection: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in test.setBackgroundColor: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in test.setEdgeArrowLookupRules: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setEdgeColorRule: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setEdgeDefaults: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setEdgeSourceArrowColorRule: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setEdgeSourceArrowShapeRule: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setEdgeTargetArrowColorRule: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setEdgeWidthRule: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setGraph: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setNodeColorRule: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setNodeDefaults: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setNodeLabelAlignment: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setNodeLabelRule: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setNodeShapeRule: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.setNodeSizeRule: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057
ERROR in test.zoom: Error in BrowserViz(portRange, host, title, quiet, browserFile = cyjsBrowserFile) : 
  no available ports in range 9047:9057

Test files with failing tests

   test_RCyjs.R 
     test.bigGraph 
     test.constructorNoGraph 
     test.constructorWithGraph 
     test.getSetPosition 
     test.layouts 
     test.layoutStrategies 
     test.nodeSelection 
     test.setBackgroundColor 
     test.setEdgeArrowLookupRules 
     test.setEdgeColorRule 
     test.setEdgeDefaults 
     test.setEdgeSourceArrowColorRule 
     test.setEdgeSourceArrowShapeRule 
     test.setEdgeTargetArrowColorRule 
     test.setEdgeWidthRule 
     test.setGraph 
     test.setNodeColorRule 
     test.setNodeDefaults 
     test.setNodeLabelAlignment 
     test.setNodeLabelRule 
     test.setNodeShapeRule 
     test.setNodeSizeRule 
     test.zoom 


Error in BiocGenerics:::testPackage("RCyjs") : 
  unit tests failed for package RCyjs
Execution halted

RCyjs.Rcheck/00install.out:

* installing *source* package ‘RCyjs’ ...
** R
** inst
** preparing package for lazy loading
Note: the specification for S3 class “AsIs” in package ‘BiocGenerics’ seems equivalent to one from package ‘jsonlite’: not turning on duplicate class definitions for this class.
Creating a new generic function for ‘layout’ in package ‘RCyjs’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Note: the specification for S3 class “AsIs” in package ‘BiocGenerics’ seems equivalent to one from package ‘jsonlite’: not turning on duplicate class definitions for this class.
* DONE (RCyjs)

RCyjs.Rcheck/RCyjs-Ex.timings:

nameusersystemelapsed