COSMIC.67 1.4.0
Julian Gehring
| Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/COSMIC.67 | | Last Changed Rev: 3279 / Revision: 3442 | | Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf COSMIC.67.buildbin-libdir COSMIC.67.Rcheck && mkdir COSMIC.67.buildbin-libdir COSMIC.67.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=COSMIC.67.buildbin-libdir COSMIC.67_1.4.0.tar.gz >COSMIC.67.Rcheck\00install.out 2>&1 && cp COSMIC.67.Rcheck\00install.out COSMIC.67-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=COSMIC.67.buildbin-libdir --install="check:COSMIC.67-install.out" --force-multiarch --no-vignettes --timings COSMIC.67_1.4.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbld/bbs-3.1-data-experiment/meat/COSMIC.67.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'COSMIC.67/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'COSMIC.67' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'COSMIC.67' can be installed ... OK
* checking installed package size ... NOTE
installed size is 39.3Mb
sub-directories of 1Mb or more:
data 16.6Mb
vcf 22.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [23s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
COSMIC.67-package 13.4 0.09 16.33
** running examples for arch 'x64' ... [30s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
COSMIC.67-package 12.54 0.24 21.83
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'test_all.R' [7s]
[8s] OK
** running tests for arch 'x64' ...
Running 'test_all.R' [9s]
[9s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'E:/biocbld/bbs-3.1-data-experiment/meat/COSMIC.67.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'COSMIC.67' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
install for x64
* installing *source* package 'COSMIC.67' ...
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
* MD5 sums
packaged installation of 'COSMIC.67' as COSMIC.67_1.4.0.zip
* DONE (COSMIC.67)