PREDAsampledata 0.8.0
Francesco Ferrari
| Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/PREDAsampledata | | Last Changed Rev: 3279 / Revision: 3442 | | Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ WARNINGS ] | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | WARNINGS | OK | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | WARNINGS | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings PREDAsampledata_0.8.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.1-data-experiment/meat/PREDAsampledata.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PREDAsampledata/DESCRIPTION’ ... OK
* this is package ‘PREDAsampledata’ version ‘0.8.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
‘PREDA’ ‘Biobase’ ‘affy’ ‘annotate’ ‘gahgu133plus2.db’
‘gahgu133plus2cdf’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PREDAsampledata’ can be installed ... [8s/14s] OK
* checking installed package size ... NOTE
installed size is 116.5Mb
sub-directories of 1Mb or more:
data 95.8Mb
sampledata 20.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
‘Biobase’ ‘PREDA’ ‘affy’ ‘annotate’ ‘gahgu133plus2.db’
‘gahgu133plus2cdf’ ‘methods’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
AffybatchRCC.RData 61.4Mb 37.6Mb xz
ExpressionSetRCC.RData 9.1Mb 7.7Mb xz
GEanalysisResults.RData 1.1Mb 599Kb xz
SODEGIRCNDataForPREDA.RData 10.6Mb 4.7Mb xz
SODEGIRCNanalysisResults.RData 3.1Mb 2.3Mb xz
SODEGIRGEDataForPREDA.RData 2.1Mb 1.8Mb xz
SODEGIRGEanalysisResults.RData 5.1Mb 4.0Mb xz
gaExpressionSetRCC.RData 3.3Mb 2.8Mb xz
* checking examples ... [9s/19s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
AffybatchRCC 3.71 0.136 7.962
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 4 NOTEs
See
‘/home/biocbuild/bbs-3.1-data-experiment/meat/PREDAsampledata.Rcheck/00check.log’
for details.
* installing *source* package ‘PREDAsampledata’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (PREDAsampledata)